Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20141 and SM_b20142 overlap by 8 nucleotides SM_b20142 and SM_b20143 are separated by 14 nucleotides SM_b20143 and SM_b20144 are separated by 85 nucleotides
SM_b20141: SM_b20141 - oligopeptide ABC transporter ATP-binding protein, at 154,809 to 156,455
_b20141
SM_b20142: SM_b20142 - oligopeptide ABC transporter permease, at 156,448 to 157,371
_b20142
SM_b20143: SM_b20143 - oligopeptide ABC transporter permease, at 157,386 to 158,300
_b20143
SM_b20144: SM_b20144 - ABC transporter oligopeptide-binding protein, at 158,386 to 159,891
_b20144
Position (kb) 157
158
159 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 156.599 kb on + strand, within SM_b20142 at 156.599 kb on + strand, within SM_b20142 at 156.599 kb on + strand, within SM_b20142 at 156.695 kb on + strand, within SM_b20142 at 156.695 kb on + strand, within SM_b20142 at 156.917 kb on + strand, within SM_b20142 at 156.917 kb on + strand, within SM_b20142 at 156.922 kb on + strand, within SM_b20142 at 156.922 kb on + strand, within SM_b20142 at 156.922 kb on + strand, within SM_b20142 at 156.923 kb on - strand, within SM_b20142 at 157.243 kb on + strand, within SM_b20142 at 157.244 kb on - strand, within SM_b20142 at 157.244 kb on - strand, within SM_b20142 at 157.244 kb on - strand, within SM_b20142 at 157.417 kb on + strand at 157.417 kb on + strand at 157.551 kb on - strand, within SM_b20143 at 158.232 kb on + strand at 158.232 kb on + strand at 158.233 kb on - strand at 158.522 kb on + strand at 158.522 kb on + strand at 158.639 kb on + strand, within SM_b20144 at 158.735 kb on + strand, within SM_b20144 at 158.735 kb on + strand, within SM_b20144 at 158.736 kb on - strand, within SM_b20144 at 158.738 kb on + strand, within SM_b20144 at 158.739 kb on - strand, within SM_b20144 at 158.879 kb on - strand, within SM_b20144 at 158.936 kb on + strand, within SM_b20144 at 159.096 kb on + strand, within SM_b20144 at 159.116 kb on + strand, within SM_b20144 at 159.117 kb on - strand, within SM_b20144 at 159.138 kb on - strand, within SM_b20144
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 156,599 + SM_b20142 0.16 +0.4 156,599 + SM_b20142 0.16 -2.7 156,599 + SM_b20142 0.16 +1.4 156,695 + SM_b20142 0.27 +1.3 156,695 + SM_b20142 0.27 +1.6 156,917 + SM_b20142 0.51 -1.9 156,917 + SM_b20142 0.51 -0.1 156,922 + SM_b20142 0.51 -2.1 156,922 + SM_b20142 0.51 -1.0 156,922 + SM_b20142 0.51 +0.2 156,923 - SM_b20142 0.51 +1.0 157,243 + SM_b20142 0.86 -0.4 157,244 - SM_b20142 0.86 -0.5 157,244 - SM_b20142 0.86 -1.9 157,244 - SM_b20142 0.86 -1.6 157,417 + -4.4 157,417 + +0.9 157,551 - SM_b20143 0.18 +2.0 158,232 + +1.3 158,232 + -3.4 158,233 - +0.4 158,522 + -0.2 158,522 + -0.7 158,639 + SM_b20144 0.17 -3.0 158,735 + SM_b20144 0.23 +0.4 158,735 + SM_b20144 0.23 +0.5 158,736 - SM_b20144 0.23 +1.6 158,738 + SM_b20144 0.23 -0.4 158,739 - SM_b20144 0.23 +0.3 158,879 - SM_b20144 0.33 +1.6 158,936 + SM_b20144 0.37 +0.5 159,096 + SM_b20144 0.47 -0.7 159,116 + SM_b20144 0.48 -1.4 159,117 - SM_b20144 0.49 +0.6 159,138 - SM_b20144 0.50 +1.1
Or see this region's nucleotide sequence