Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20104 and SM_b20105 are separated by 101 nucleotides SM_b20105 and SM_b20106 are separated by 179 nucleotides SM_b20106 and SM_b20107 are separated by 67 nucleotides
SM_b20104: SM_b20104 - hypothetical protein, at 115,152 to 115,910
_b20104
SM_b20105: SM_b20105 - transcriptional regulator, at 116,012 to 116,644
_b20105
SM_b20106: SM_b20106 - transcriptional regulator, at 116,824 to 117,555
_b20106
SM_b20107: SM_b20107 - hypothetical protein, at 117,623 to 118,579
_b20107
Position (kb) 116
117
118 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 115.900 kb on + strand at 115.901 kb on - strand at 115.983 kb on + strand at 115.983 kb on + strand at 115.984 kb on - strand at 115.984 kb on - strand at 116.013 kb on + strand at 116.024 kb on + strand at 116.024 kb on + strand at 116.025 kb on - strand at 116.025 kb on - strand at 116.025 kb on - strand at 116.025 kb on - strand at 116.456 kb on + strand, within SM_b20105 at 116.495 kb on + strand, within SM_b20105 at 116.915 kb on + strand, within SM_b20106 at 116.916 kb on - strand, within SM_b20106 at 117.064 kb on + strand, within SM_b20106 at 117.064 kb on + strand, within SM_b20106 at 117.064 kb on + strand, within SM_b20106 at 117.064 kb on + strand, within SM_b20106 at 117.065 kb on - strand, within SM_b20106 at 117.065 kb on - strand, within SM_b20106 at 117.117 kb on + strand, within SM_b20106 at 117.118 kb on - strand, within SM_b20106 at 117.154 kb on + strand, within SM_b20106 at 117.155 kb on - strand, within SM_b20106 at 117.155 kb on - strand, within SM_b20106 at 117.480 kb on - strand, within SM_b20106 at 117.540 kb on + strand at 117.540 kb on + strand at 117.650 kb on + strand at 117.792 kb on - strand, within SM_b20107 at 117.792 kb on - strand, within SM_b20107 at 117.867 kb on + strand, within SM_b20107 at 117.868 kb on - strand, within SM_b20107 at 117.868 kb on - strand, within SM_b20107 at 118.037 kb on + strand, within SM_b20107 at 118.055 kb on + strand, within SM_b20107 at 118.056 kb on - strand, within SM_b20107 at 118.056 kb on - strand, within SM_b20107 at 118.056 kb on - strand, within SM_b20107 at 118.056 kb on - strand, within SM_b20107 at 118.115 kb on + strand, within SM_b20107 at 118.115 kb on + strand, within SM_b20107 at 118.115 kb on + strand, within SM_b20107 at 118.115 kb on + strand, within SM_b20107 at 118.116 kb on - strand, within SM_b20107 at 118.167 kb on + strand, within SM_b20107 at 118.168 kb on - strand, within SM_b20107 at 118.253 kb on + strand, within SM_b20107 at 118.254 kb on - strand, within SM_b20107 at 118.254 kb on - strand, within SM_b20107 at 118.254 kb on - strand, within SM_b20107 at 118.256 kb on - strand, within SM_b20107 at 118.256 kb on - strand, within SM_b20107 at 118.303 kb on + strand, within SM_b20107 at 118.303 kb on + strand, within SM_b20107
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 115,900 + -0.6 115,901 - +0.5 115,983 + -0.9 115,983 + -0.1 115,984 - +0.0 115,984 - -2.5 116,013 + +0.3 116,024 + +0.3 116,024 + -0.6 116,025 - -4.5 116,025 - -2.2 116,025 - -3.3 116,025 - -1.6 116,456 + SM_b20105 0.70 -2.9 116,495 + SM_b20105 0.76 -3.8 116,915 + SM_b20106 0.12 +1.0 116,916 - SM_b20106 0.13 -1.7 117,064 + SM_b20106 0.33 -1.3 117,064 + SM_b20106 0.33 +0.5 117,064 + SM_b20106 0.33 +0.4 117,064 + SM_b20106 0.33 -3.3 117,065 - SM_b20106 0.33 +0.7 117,065 - SM_b20106 0.33 -1.6 117,117 + SM_b20106 0.40 -0.5 117,118 - SM_b20106 0.40 -0.2 117,154 + SM_b20106 0.45 +2.0 117,155 - SM_b20106 0.45 -2.2 117,155 - SM_b20106 0.45 -1.2 117,480 - SM_b20106 0.90 -1.7 117,540 + -1.3 117,540 + -1.0 117,650 + +1.5 117,792 - SM_b20107 0.18 -1.3 117,792 - SM_b20107 0.18 +1.4 117,867 + SM_b20107 0.25 -1.1 117,868 - SM_b20107 0.26 -1.3 117,868 - SM_b20107 0.26 -3.4 118,037 + SM_b20107 0.43 -0.2 118,055 + SM_b20107 0.45 -1.6 118,056 - SM_b20107 0.45 -2.8 118,056 - SM_b20107 0.45 +0.8 118,056 - SM_b20107 0.45 +0.4 118,056 - SM_b20107 0.45 +1.3 118,115 + SM_b20107 0.51 -0.4 118,115 + SM_b20107 0.51 -0.7 118,115 + SM_b20107 0.51 -2.6 118,115 + SM_b20107 0.51 -3.3 118,116 - SM_b20107 0.52 +0.6 118,167 + SM_b20107 0.57 +0.6 118,168 - SM_b20107 0.57 -0.5 118,253 + SM_b20107 0.66 -1.9 118,254 - SM_b20107 0.66 +0.2 118,254 - SM_b20107 0.66 -1.9 118,254 - SM_b20107 0.66 +0.1 118,256 - SM_b20107 0.66 -3.1 118,256 - SM_b20107 0.66 -0.8 118,303 + SM_b20107 0.71 +1.9 118,303 + SM_b20107 0.71 +0.6
Or see this region's nucleotide sequence