Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20086 and SM_b20087 are separated by 22 nucleotides SM_b20087 and SM_b20088 are separated by 154 nucleotides SM_b20088 and SM_b20089 are separated by 18 nucleotides SM_b20089 and SM_b20090 are separated by 3 nucleotides SM_b20090 and SM_b20091 are separated by 115 nucleotides
SM_b20086: SM_b20086 - hypothetical protein, at 95,472 to 95,774
_b20086
SM_b20087: SM_b20087 - hypothetical protein, at 95,797 to 96,402
_b20087
SM_b20088: SM_b20088 - hypothetical protein, at 96,557 to 98,533
_b20088
SM_b20089: SM_b20089 - hypothetical protein, at 98,552 to 98,875
_b20089
SM_b20090: SM_b20090 - hypothetical protein, at 98,879 to 99,070
_b20090
SM_b20091: SM_b20091 - hypothetical protein, at 99,186 to 99,692
_b20091
Position (kb) 96
97
98
99 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5
6 at 95.694 kb on - strand, within SM_b20086 at 95.694 kb on - strand, within SM_b20086 at 95.716 kb on - strand, within SM_b20086 at 95.762 kb on - strand at 95.828 kb on - strand at 95.887 kb on - strand, within SM_b20087 at 95.942 kb on + strand, within SM_b20087 at 95.942 kb on + strand, within SM_b20087 at 95.943 kb on - strand, within SM_b20087 at 96.029 kb on + strand, within SM_b20087 at 96.030 kb on - strand, within SM_b20087 at 96.281 kb on + strand, within SM_b20087 at 96.282 kb on - strand, within SM_b20087 at 96.303 kb on + strand, within SM_b20087 at 96.348 kb on + strand at 96.349 kb on - strand at 96.512 kb on + strand at 96.513 kb on - strand at 96.513 kb on - strand at 96.749 kb on + strand at 96.750 kb on - strand at 96.750 kb on - strand at 96.750 kb on - strand at 96.750 kb on - strand at 96.751 kb on + strand at 96.751 kb on + strand at 96.752 kb on - strand at 96.752 kb on - strand at 96.752 kb on - strand at 96.797 kb on - strand, within SM_b20088 at 96.860 kb on + strand, within SM_b20088 at 96.860 kb on + strand, within SM_b20088 at 96.860 kb on + strand, within SM_b20088 at 96.861 kb on - strand, within SM_b20088 at 96.861 kb on - strand, within SM_b20088 at 96.861 kb on - strand, within SM_b20088 at 96.861 kb on - strand, within SM_b20088 at 96.861 kb on - strand, within SM_b20088 at 96.866 kb on + strand, within SM_b20088 at 96.867 kb on - strand, within SM_b20088 at 96.868 kb on + strand, within SM_b20088 at 96.869 kb on - strand, within SM_b20088 at 96.937 kb on + strand, within SM_b20088 at 96.937 kb on + strand, within SM_b20088 at 96.938 kb on - strand, within SM_b20088 at 96.999 kb on + strand, within SM_b20088 at 97.026 kb on + strand, within SM_b20088 at 97.187 kb on + strand, within SM_b20088 at 97.482 kb on - strand, within SM_b20088 at 97.482 kb on - strand, within SM_b20088 at 97.595 kb on - strand, within SM_b20088 at 97.595 kb on - strand, within SM_b20088 at 97.631 kb on + strand, within SM_b20088 at 97.646 kb on + strand, within SM_b20088 at 97.646 kb on + strand, within SM_b20088 at 97.646 kb on + strand, within SM_b20088 at 97.648 kb on + strand, within SM_b20088 at 97.648 kb on + strand, within SM_b20088 at 97.649 kb on - strand, within SM_b20088 at 97.651 kb on + strand, within SM_b20088 at 97.651 kb on + strand, within SM_b20088 at 97.730 kb on + strand, within SM_b20088 at 97.769 kb on + strand, within SM_b20088 at 97.931 kb on + strand, within SM_b20088 at 97.934 kb on + strand, within SM_b20088 at 97.934 kb on + strand, within SM_b20088 at 97.935 kb on - strand, within SM_b20088 at 97.946 kb on + strand, within SM_b20088 at 97.946 kb on + strand, within SM_b20088 at 97.947 kb on - strand, within SM_b20088 at 97.947 kb on - strand, within SM_b20088 at 97.947 kb on - strand, within SM_b20088 at 97.947 kb on - strand, within SM_b20088 at 97.950 kb on - strand, within SM_b20088 at 97.988 kb on - strand, within SM_b20088 at 97.988 kb on - strand, within SM_b20088 at 97.988 kb on - strand, within SM_b20088 at 98.286 kb on + strand, within SM_b20088 at 98.287 kb on - strand, within SM_b20088 at 98.405 kb on + strand at 98.493 kb on + strand at 98.493 kb on + strand at 98.494 kb on - strand at 98.494 kb on - strand at 98.553 kb on + strand at 98.554 kb on - strand at 98.554 kb on - strand at 98.800 kb on - strand, within SM_b20089 at 98.800 kb on - strand, within SM_b20089 at 98.853 kb on + strand at 98.854 kb on - strand at 98.854 kb on - strand at 98.855 kb on + strand at 98.856 kb on - strand at 98.880 kb on + strand at 99.180 kb on + strand at 99.192 kb on - strand at 99.404 kb on + strand, within SM_b20091 at 99.405 kb on - strand, within SM_b20091 at 99.489 kb on + strand, within SM_b20091 at 99.491 kb on + strand, within SM_b20091 at 99.491 kb on + strand, within SM_b20091 at 99.491 kb on + strand, within SM_b20091 at 99.492 kb on - strand, within SM_b20091 at 99.492 kb on - strand, within SM_b20091 at 99.503 kb on + strand, within SM_b20091 at 99.504 kb on - strand, within SM_b20091 at 99.507 kb on + strand, within SM_b20091
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 95,694 - SM_b20086 0.73 +0.3 95,694 - SM_b20086 0.73 -1.1 95,716 - SM_b20086 0.81 +1.3 95,762 - -2.1 95,828 - -0.2 95,887 - SM_b20087 0.15 +2.9 95,942 + SM_b20087 0.24 -3.7 95,942 + SM_b20087 0.24 +0.8 95,943 - SM_b20087 0.24 -0.6 96,029 + SM_b20087 0.38 -2.1 96,030 - SM_b20087 0.38 +0.4 96,281 + SM_b20087 0.80 +1.9 96,282 - SM_b20087 0.80 +0.6 96,303 + SM_b20087 0.83 +0.7 96,348 + +0.3 96,349 - -0.2 96,512 + -3.1 96,513 - -3.0 96,513 - -0.9 96,749 + -1.3 96,750 - +1.3 96,750 - -2.6 96,750 - -0.6 96,750 - -3.7 96,751 + +1.8 96,751 + +2.1 96,752 - +1.1 96,752 - +0.1 96,752 - -0.6 96,797 - SM_b20088 0.12 +0.9 96,860 + SM_b20088 0.15 -2.7 96,860 + SM_b20088 0.15 +4.0 96,860 + SM_b20088 0.15 +1.4 96,861 - SM_b20088 0.15 -1.1 96,861 - SM_b20088 0.15 +0.4 96,861 - SM_b20088 0.15 -1.6 96,861 - SM_b20088 0.15 -1.5 96,861 - SM_b20088 0.15 -1.6 96,866 + SM_b20088 0.16 -0.1 96,867 - SM_b20088 0.16 -3.6 96,868 + SM_b20088 0.16 +0.4 96,869 - SM_b20088 0.16 +0.7 96,937 + SM_b20088 0.19 +0.3 96,937 + SM_b20088 0.19 +0.4 96,938 - SM_b20088 0.19 -0.4 96,999 + SM_b20088 0.22 +1.9 97,026 + SM_b20088 0.24 +1.1 97,187 + SM_b20088 0.32 -1.0 97,482 - SM_b20088 0.47 -0.6 97,482 - SM_b20088 0.47 -4.8 97,595 - SM_b20088 0.53 +1.0 97,595 - SM_b20088 0.53 +6.2 97,631 + SM_b20088 0.54 +0.6 97,646 + SM_b20088 0.55 -0.1 97,646 + SM_b20088 0.55 +3.3 97,646 + SM_b20088 0.55 +0.7 97,648 + SM_b20088 0.55 +1.3 97,648 + SM_b20088 0.55 +3.3 97,649 - SM_b20088 0.55 +1.2 97,651 + SM_b20088 0.55 -0.7 97,651 + SM_b20088 0.55 -0.9 97,730 + SM_b20088 0.59 +1.0 97,769 + SM_b20088 0.61 -0.2 97,931 + SM_b20088 0.69 +1.6 97,934 + SM_b20088 0.70 -1.9 97,934 + SM_b20088 0.70 -0.3 97,935 - SM_b20088 0.70 +0.6 97,946 + SM_b20088 0.70 +0.7 97,946 + SM_b20088 0.70 +0.9 97,947 - SM_b20088 0.70 +0.2 97,947 - SM_b20088 0.70 -4.2 97,947 - SM_b20088 0.70 +1.7 97,947 - SM_b20088 0.70 +0.9 97,950 - SM_b20088 0.70 +0.2 97,988 - SM_b20088 0.72 -0.3 97,988 - SM_b20088 0.72 -0.4 97,988 - SM_b20088 0.72 -0.9 98,286 + SM_b20088 0.87 +1.3 98,287 - SM_b20088 0.88 +0.4 98,405 + -2.1 98,493 + +1.1 98,493 + -0.3 98,494 - -0.8 98,494 - +0.7 98,553 + +0.4 98,554 - -0.0 98,554 - +0.3 98,800 - SM_b20089 0.77 +0.3 98,800 - SM_b20089 0.77 -2.9 98,853 + -2.0 98,854 - -0.1 98,854 - -1.9 98,855 + -2.9 98,856 - -1.1 98,880 + +0.6 99,180 + +0.2 99,192 - +1.3 99,404 + SM_b20091 0.43 -1.7 99,405 - SM_b20091 0.43 +0.4 99,489 + SM_b20091 0.60 +0.0 99,491 + SM_b20091 0.60 -3.7 99,491 + SM_b20091 0.60 -1.1 99,491 + SM_b20091 0.60 -1.7 99,492 - SM_b20091 0.60 +0.5 99,492 - SM_b20091 0.60 -0.1 99,503 + SM_b20091 0.63 -1.0 99,504 - SM_b20091 0.63 -0.1 99,507 + SM_b20091 0.63 -0.2
Or see this region's nucleotide sequence