Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20071 and SM_b20072 are separated by 471 nucleotides SM_b20072 and SM_b20073 are separated by 162 nucleotides
SM_b20071: SM_b20071 - efflux protein, at 79,574 to 80,767
_b20071
SM_b20072: SM_b20072 - rhizopine binding protein, at 81,239 to 82,168
_b20072
SM_b20073: SM_b20073 - oxidoreductase, at 82,331 to 83,188
_b20073
Position (kb)
81
82
83 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 80.322 kb on + strand, within SM_b20071 at 80.322 kb on + strand, within SM_b20071 at 80.322 kb on + strand, within SM_b20071 at 80.322 kb on + strand, within SM_b20071 at 80.323 kb on - strand, within SM_b20071 at 80.323 kb on - strand, within SM_b20071 at 80.323 kb on - strand, within SM_b20071 at 80.628 kb on + strand, within SM_b20071 at 80.629 kb on - strand, within SM_b20071 at 80.629 kb on - strand, within SM_b20071 at 80.731 kb on - strand at 80.754 kb on - strand at 80.848 kb on + strand at 81.217 kb on - strand at 81.392 kb on + strand, within SM_b20072 at 81.392 kb on + strand, within SM_b20072 at 81.393 kb on - strand, within SM_b20072 at 81.721 kb on - strand, within SM_b20072 at 81.853 kb on - strand, within SM_b20072 at 81.853 kb on - strand, within SM_b20072 at 82.157 kb on + strand at 82.157 kb on + strand at 82.158 kb on - strand at 82.158 kb on - strand at 82.172 kb on + strand at 82.278 kb on + strand at 82.279 kb on - strand at 82.279 kb on - strand at 82.281 kb on - strand at 82.380 kb on + strand at 82.381 kb on - strand at 82.381 kb on - strand at 82.381 kb on - strand at 82.450 kb on + strand, within SM_b20073 at 82.450 kb on + strand, within SM_b20073 at 82.451 kb on - strand, within SM_b20073 at 82.547 kb on + strand, within SM_b20073 at 82.548 kb on - strand, within SM_b20073 at 82.617 kb on + strand, within SM_b20073 at 82.618 kb on - strand, within SM_b20073 at 82.716 kb on + strand, within SM_b20073 at 82.716 kb on + strand, within SM_b20073 at 82.971 kb on + strand, within SM_b20073 at 82.971 kb on + strand, within SM_b20073 at 82.978 kb on + strand, within SM_b20073 at 82.978 kb on + strand, within SM_b20073
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 80,322 + SM_b20071 0.63 +1.1 80,322 + SM_b20071 0.63 -0.6 80,322 + SM_b20071 0.63 +0.5 80,322 + SM_b20071 0.63 +2.1 80,323 - SM_b20071 0.63 +0.4 80,323 - SM_b20071 0.63 -0.7 80,323 - SM_b20071 0.63 -2.8 80,628 + SM_b20071 0.88 +0.4 80,629 - SM_b20071 0.88 -3.5 80,629 - SM_b20071 0.88 -3.7 80,731 - +0.0 80,754 - +1.2 80,848 + +0.3 81,217 - +0.1 81,392 + SM_b20072 0.16 -1.2 81,392 + SM_b20072 0.16 -0.6 81,393 - SM_b20072 0.17 +2.2 81,721 - SM_b20072 0.52 +0.6 81,853 - SM_b20072 0.66 +0.1 81,853 - SM_b20072 0.66 -0.2 82,157 + +1.0 82,157 + +0.7 82,158 - +0.0 82,158 - -0.5 82,172 + +1.3 82,278 + -2.4 82,279 - -2.2 82,279 - +1.8 82,281 - -0.7 82,380 + +0.6 82,381 - +0.7 82,381 - -3.4 82,381 - +1.4 82,450 + SM_b20073 0.14 +0.4 82,450 + SM_b20073 0.14 +1.0 82,451 - SM_b20073 0.14 +0.2 82,547 + SM_b20073 0.25 +2.0 82,548 - SM_b20073 0.25 +0.8 82,617 + SM_b20073 0.33 +1.7 82,618 - SM_b20073 0.33 +1.1 82,716 + SM_b20073 0.45 -1.0 82,716 + SM_b20073 0.45 +0.7 82,971 + SM_b20073 0.75 +1.2 82,971 + SM_b20073 0.75 +1.6 82,978 + SM_b20073 0.75 +2.1 82,978 + SM_b20073 0.75 -0.6
Or see this region's nucleotide sequence