Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20069 and SM_b20070 are separated by 260 nucleotides SM_b20070 and SM_b20071 are separated by 217 nucleotides
SM_b20069: SM_b20069 - amino acid carrier protein, at 76,205 to 77,608
_b20069
SM_b20070: SM_b20070 - sulfate permease, at 77,869 to 79,356
_b20070
SM_b20071: SM_b20071 - efflux protein, at 79,574 to 80,767
_b20071
Position (kb) 77
78
79
80 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 77.264 kb on + strand, within SM_b20069 at 77.271 kb on + strand, within SM_b20069 at 77.271 kb on + strand, within SM_b20069 at 77.271 kb on + strand, within SM_b20069 at 77.321 kb on + strand, within SM_b20069 at 77.321 kb on + strand, within SM_b20069 at 77.322 kb on - strand, within SM_b20069 at 77.325 kb on - strand, within SM_b20069 at 77.325 kb on - strand, within SM_b20069 at 77.531 kb on + strand at 77.607 kb on - strand at 77.665 kb on + strand at 77.679 kb on + strand at 77.679 kb on + strand at 77.684 kb on - strand at 77.684 kb on - strand at 77.684 kb on - strand at 77.816 kb on - strand at 77.931 kb on + strand at 77.932 kb on - strand at 77.932 kb on - strand at 77.987 kb on + strand at 77.991 kb on + strand at 77.992 kb on - strand at 77.992 kb on - strand at 77.992 kb on - strand at 78.143 kb on + strand, within SM_b20070 at 78.143 kb on + strand, within SM_b20070 at 78.143 kb on + strand, within SM_b20070 at 78.144 kb on - strand, within SM_b20070 at 78.683 kb on + strand, within SM_b20070 at 78.683 kb on + strand, within SM_b20070 at 78.863 kb on + strand, within SM_b20070 at 78.864 kb on - strand, within SM_b20070 at 78.875 kb on + strand, within SM_b20070 at 78.876 kb on - strand, within SM_b20070 at 78.908 kb on + strand, within SM_b20070 at 78.909 kb on - strand, within SM_b20070 at 79.085 kb on + strand, within SM_b20070 at 79.086 kb on - strand, within SM_b20070 at 79.086 kb on - strand, within SM_b20070 at 79.086 kb on - strand, within SM_b20070 at 79.086 kb on - strand, within SM_b20070 at 79.265 kb on - strand at 79.332 kb on + strand at 79.332 kb on + strand at 79.335 kb on - strand at 79.335 kb on - strand at 79.374 kb on + strand at 79.375 kb on - strand at 79.495 kb on + strand at 79.495 kb on + strand at 79.830 kb on + strand, within SM_b20071 at 79.830 kb on + strand, within SM_b20071 at 79.830 kb on + strand, within SM_b20071 at 79.830 kb on + strand, within SM_b20071 at 79.830 kb on + strand, within SM_b20071 at 79.831 kb on - strand, within SM_b20071 at 80.034 kb on + strand, within SM_b20071 at 80.130 kb on + strand, within SM_b20071 at 80.322 kb on + strand, within SM_b20071 at 80.322 kb on + strand, within SM_b20071 at 80.322 kb on + strand, within SM_b20071 at 80.322 kb on + strand, within SM_b20071 at 80.323 kb on - strand, within SM_b20071 at 80.323 kb on - strand, within SM_b20071 at 80.323 kb on - strand, within SM_b20071
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 77,264 + SM_b20069 0.75 -2.4 77,271 + SM_b20069 0.76 -3.3 77,271 + SM_b20069 0.76 +0.4 77,271 + SM_b20069 0.76 -0.5 77,321 + SM_b20069 0.79 -1.6 77,321 + SM_b20069 0.79 +0.2 77,322 - SM_b20069 0.80 +0.8 77,325 - SM_b20069 0.80 +0.1 77,325 - SM_b20069 0.80 +1.3 77,531 + -3.4 77,607 - +0.1 77,665 + -0.4 77,679 + -0.2 77,679 + +1.7 77,684 - -1.6 77,684 - -0.4 77,684 - +2.6 77,816 - +0.6 77,931 + -1.3 77,932 - -3.4 77,932 - -0.3 77,987 + -0.4 77,991 + -1.7 77,992 - -0.6 77,992 - +0.5 77,992 - +0.6 78,143 + SM_b20070 0.18 +0.9 78,143 + SM_b20070 0.18 +0.7 78,143 + SM_b20070 0.18 -0.3 78,144 - SM_b20070 0.18 -1.3 78,683 + SM_b20070 0.55 -0.2 78,683 + SM_b20070 0.55 -1.5 78,863 + SM_b20070 0.67 +0.3 78,864 - SM_b20070 0.67 -0.3 78,875 + SM_b20070 0.68 -0.7 78,876 - SM_b20070 0.68 +0.6 78,908 + SM_b20070 0.70 -0.6 78,909 - SM_b20070 0.70 -2.2 79,085 + SM_b20070 0.82 -2.4 79,086 - SM_b20070 0.82 -0.3 79,086 - SM_b20070 0.82 +0.7 79,086 - SM_b20070 0.82 -1.2 79,086 - SM_b20070 0.82 +0.6 79,265 - -0.1 79,332 + -0.5 79,332 + +0.1 79,335 - -2.7 79,335 - +0.2 79,374 + +0.1 79,375 - -3.6 79,495 + -0.2 79,495 + +0.9 79,830 + SM_b20071 0.21 +0.3 79,830 + SM_b20071 0.21 -0.3 79,830 + SM_b20071 0.21 -1.8 79,830 + SM_b20071 0.21 +0.3 79,830 + SM_b20071 0.21 +0.6 79,831 - SM_b20071 0.22 +0.0 80,034 + SM_b20071 0.39 -0.7 80,130 + SM_b20071 0.47 -0.9 80,322 + SM_b20071 0.63 +1.1 80,322 + SM_b20071 0.63 -0.6 80,322 + SM_b20071 0.63 +0.5 80,322 + SM_b20071 0.63 +2.1 80,323 - SM_b20071 0.63 +0.4 80,323 - SM_b20071 0.63 -0.7 80,323 - SM_b20071 0.63 -2.8
Or see this region's nucleotide sequence