Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20040 and SM_b20041 are separated by 190 nucleotides SM_b20041 and SM_b20042 are separated by 22 nucleotides SM_b20042 and SM_b20043 are separated by 373 nucleotides
SM_b20040: SM_b20040 - hypothetical protein, at 50,652 to 51,512
_b20040
SM_b20041: SM_b20041 - hypothetical protein, at 51,703 to 52,233
_b20041
SM_b20042: SM_b20042 - hypothetical protein, at 52,256 to 53,413
_b20042
SM_b20043: SM_b20043 - hypothetical protein, at 53,787 to 54,629
_b20043
Position (kb) 52
53
54 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 51.696 kb on + strand at 51.696 kb on + strand at 51.696 kb on + strand at 51.697 kb on - strand at 51.720 kb on - strand at 51.770 kb on + strand, within SM_b20041 at 51.925 kb on - strand, within SM_b20041 at 52.002 kb on + strand, within SM_b20041 at 52.012 kb on + strand, within SM_b20041 at 52.012 kb on + strand, within SM_b20041 at 52.012 kb on + strand, within SM_b20041 at 52.013 kb on - strand, within SM_b20041 at 52.165 kb on - strand, within SM_b20041 at 52.165 kb on - strand, within SM_b20041 at 52.606 kb on - strand, within SM_b20042 at 52.700 kb on - strand, within SM_b20042 at 52.700 kb on - strand, within SM_b20042 at 52.700 kb on - strand, within SM_b20042 at 52.700 kb on - strand, within SM_b20042 at 52.700 kb on - strand, within SM_b20042 at 53.213 kb on + strand, within SM_b20042 at 53.407 kb on - strand at 53.475 kb on + strand at 53.476 kb on - strand at 53.496 kb on + strand at 53.496 kb on + strand at 53.497 kb on - strand at 53.568 kb on + strand at 53.579 kb on + strand at 53.579 kb on + strand at 53.830 kb on + strand at 53.830 kb on + strand at 53.830 kb on + strand at 53.831 kb on - strand at 53.831 kb on - strand at 53.831 kb on - strand at 53.831 kb on - strand at 53.837 kb on + strand at 53.840 kb on - strand at 53.857 kb on - strand at 53.942 kb on + strand, within SM_b20043 at 53.942 kb on + strand, within SM_b20043 at 53.943 kb on - strand, within SM_b20043 at 54.014 kb on + strand, within SM_b20043 at 54.015 kb on - strand, within SM_b20043 at 54.015 kb on - strand, within SM_b20043 at 54.033 kb on - strand, within SM_b20043 at 54.177 kb on - strand, within SM_b20043 at 54.208 kb on + strand, within SM_b20043 at 54.232 kb on + strand, within SM_b20043 at 54.232 kb on + strand, within SM_b20043 at 54.286 kb on - strand, within SM_b20043 at 54.400 kb on - strand, within SM_b20043 at 54.400 kb on - strand, within SM_b20043 at 54.400 kb on - strand, within SM_b20043
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 51,696 + +1.1 51,696 + -0.2 51,696 + +1.4 51,697 - -0.6 51,720 - +0.6 51,770 + SM_b20041 0.13 -0.2 51,925 - SM_b20041 0.42 +0.4 52,002 + SM_b20041 0.56 +0.2 52,012 + SM_b20041 0.58 +1.3 52,012 + SM_b20041 0.58 -0.5 52,012 + SM_b20041 0.58 +0.5 52,013 - SM_b20041 0.58 -3.6 52,165 - SM_b20041 0.87 +0.3 52,165 - SM_b20041 0.87 +0.7 52,606 - SM_b20042 0.30 +0.0 52,700 - SM_b20042 0.38 -3.3 52,700 - SM_b20042 0.38 +1.3 52,700 - SM_b20042 0.38 -0.2 52,700 - SM_b20042 0.38 +2.2 52,700 - SM_b20042 0.38 -0.7 53,213 + SM_b20042 0.83 -1.7 53,407 - -3.3 53,475 + -0.3 53,476 - +0.0 53,496 + -4.3 53,496 + -0.4 53,497 - -0.1 53,568 + +1.1 53,579 + +1.8 53,579 + -1.8 53,830 + +1.3 53,830 + +1.8 53,830 + +0.5 53,831 - +3.1 53,831 - -0.4 53,831 - +1.1 53,831 - +0.5 53,837 + -0.6 53,840 - +0.4 53,857 - +1.2 53,942 + SM_b20043 0.18 +0.1 53,942 + SM_b20043 0.18 -2.4 53,943 - SM_b20043 0.19 +0.9 54,014 + SM_b20043 0.27 -3.3 54,015 - SM_b20043 0.27 +0.1 54,015 - SM_b20043 0.27 +0.7 54,033 - SM_b20043 0.29 +0.6 54,177 - SM_b20043 0.46 +1.3 54,208 + SM_b20043 0.50 -1.1 54,232 + SM_b20043 0.53 +1.9 54,232 + SM_b20043 0.53 +0.7 54,286 - SM_b20043 0.59 +0.9 54,400 - SM_b20043 0.73 +0.8 54,400 - SM_b20043 0.73 +0.3 54,400 - SM_b20043 0.73 +1.2
Or see this region's nucleotide sequence