Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20028 and SM_b20029 are separated by 439 nucleotides SM_b20029 and SM_b20030 overlap by 1 nucleotides SM_b20030 and SM_b20031 are separated by 25 nucleotides
SM_b20028: SM_b20028 - hypothetical protein, at 39,374 to 40,510
_b20028
SM_b20029: SM_b20029 - hypothetical protein, at 40,950 to 41,423
_b20029
SM_b20030: SM_b20030 - RNA polymerase sigma factor SigJ, at 41,423 to 42,280
_b20030
SM_b20031: SM_b20031 - hypothetical protein, at 42,306 to 42,554
_b20031
Position (kb) 40
41
42 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 39.953 kb on + strand, within SM_b20028 at 39.953 kb on + strand, within SM_b20028 at 40.020 kb on - strand, within SM_b20028 at 40.020 kb on - strand, within SM_b20028 at 40.068 kb on + strand, within SM_b20028 at 40.069 kb on - strand, within SM_b20028 at 40.150 kb on - strand, within SM_b20028 at 40.173 kb on + strand, within SM_b20028 at 40.173 kb on + strand, within SM_b20028 at 40.174 kb on - strand, within SM_b20028 at 40.239 kb on + strand, within SM_b20028 at 40.345 kb on + strand, within SM_b20028 at 40.346 kb on - strand, within SM_b20028 at 40.347 kb on + strand, within SM_b20028 at 40.347 kb on + strand, within SM_b20028 at 40.347 kb on + strand, within SM_b20028 at 40.347 kb on + strand, within SM_b20028 at 40.348 kb on - strand, within SM_b20028 at 40.510 kb on + strand at 40.510 kb on + strand at 40.510 kb on + strand at 40.510 kb on + strand at 40.511 kb on - strand at 40.511 kb on - strand at 40.511 kb on - strand at 40.511 kb on - strand at 40.511 kb on - strand at 40.512 kb on + strand at 40.512 kb on + strand at 40.512 kb on + strand at 40.512 kb on + strand at 40.512 kb on + strand at 40.512 kb on + strand at 40.512 kb on + strand at 40.513 kb on - strand at 40.513 kb on - strand at 40.513 kb on - strand at 40.513 kb on - strand at 40.513 kb on - strand at 40.513 kb on - strand at 40.514 kb on + strand at 40.515 kb on - strand at 40.515 kb on - strand at 40.528 kb on + strand at 40.547 kb on + strand at 40.547 kb on + strand at 40.548 kb on - strand at 40.548 kb on - strand at 40.565 kb on + strand at 40.565 kb on + strand at 40.566 kb on - strand at 40.597 kb on + strand at 40.598 kb on - strand at 40.598 kb on - strand at 40.801 kb on + strand at 40.801 kb on + strand at 40.801 kb on + strand at 40.801 kb on + strand at 40.801 kb on + strand at 40.802 kb on - strand at 40.802 kb on - strand at 40.802 kb on - strand at 40.802 kb on - strand at 40.802 kb on - strand at 41.048 kb on + strand, within SM_b20029 at 41.154 kb on + strand, within SM_b20029 at 41.154 kb on + strand, within SM_b20029 at 41.155 kb on - strand, within SM_b20029 at 41.155 kb on - strand, within SM_b20029 at 41.188 kb on - strand, within SM_b20029 at 41.268 kb on + strand, within SM_b20029 at 41.330 kb on + strand, within SM_b20029 at 41.531 kb on - strand, within SM_b20030 at 41.614 kb on - strand, within SM_b20030 at 41.666 kb on + strand, within SM_b20030 at 41.666 kb on + strand, within SM_b20030 at 41.666 kb on + strand, within SM_b20030 at 41.666 kb on + strand, within SM_b20030 at 41.667 kb on - strand, within SM_b20030 at 41.667 kb on - strand, within SM_b20030 at 42.239 kb on + strand at 42.239 kb on + strand at 42.307 kb on + strand at 42.372 kb on - strand, within SM_b20031 at 42.372 kb on - strand, within SM_b20031 at 42.372 kb on - strand, within SM_b20031 at 42.372 kb on - strand, within SM_b20031
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 39,953 + SM_b20028 0.51 +0.7 39,953 + SM_b20028 0.51 -0.1 40,020 - SM_b20028 0.57 -1.3 40,020 - SM_b20028 0.57 -0.9 40,068 + SM_b20028 0.61 +0.4 40,069 - SM_b20028 0.61 +0.6 40,150 - SM_b20028 0.68 +1.5 40,173 + SM_b20028 0.70 -1.1 40,173 + SM_b20028 0.70 +0.4 40,174 - SM_b20028 0.70 +0.5 40,239 + SM_b20028 0.76 -0.3 40,345 + SM_b20028 0.85 -0.1 40,346 - SM_b20028 0.85 +0.6 40,347 + SM_b20028 0.86 +0.2 40,347 + SM_b20028 0.86 +1.0 40,347 + SM_b20028 0.86 +2.7 40,347 + SM_b20028 0.86 -0.3 40,348 - SM_b20028 0.86 +0.4 40,510 + -1.7 40,510 + +0.2 40,510 + +0.6 40,510 + +1.3 40,511 - +0.3 40,511 - -0.3 40,511 - -1.2 40,511 - -3.4 40,511 - +1.4 40,512 + +1.6 40,512 + +0.2 40,512 + -1.1 40,512 + +0.2 40,512 + +1.4 40,512 + +0.6 40,512 + +0.6 40,513 - +1.7 40,513 - -0.4 40,513 - -4.0 40,513 - -0.8 40,513 - +1.3 40,513 - +1.3 40,514 + -0.4 40,515 - +0.4 40,515 - -1.9 40,528 + +0.2 40,547 + -1.2 40,547 + -1.1 40,548 - -1.1 40,548 - +1.3 40,565 + -0.3 40,565 + -0.2 40,566 - -3.5 40,597 + +1.1 40,598 - +0.8 40,598 - -1.3 40,801 + +1.0 40,801 + +0.6 40,801 + +0.7 40,801 + +0.8 40,801 + +0.2 40,802 - +0.3 40,802 - +0.1 40,802 - -2.7 40,802 - -2.8 40,802 - -1.1 41,048 + SM_b20029 0.21 -0.3 41,154 + SM_b20029 0.43 -1.5 41,154 + SM_b20029 0.43 -1.1 41,155 - SM_b20029 0.43 +0.4 41,155 - SM_b20029 0.43 -2.1 41,188 - SM_b20029 0.50 -2.7 41,268 + SM_b20029 0.67 +0.4 41,330 + SM_b20029 0.80 -2.7 41,531 - SM_b20030 0.13 -1.1 41,614 - SM_b20030 0.22 -1.2 41,666 + SM_b20030 0.28 -1.0 41,666 + SM_b20030 0.28 +0.0 41,666 + SM_b20030 0.28 -1.6 41,666 + SM_b20030 0.28 +1.5 41,667 - SM_b20030 0.28 -0.1 41,667 - SM_b20030 0.28 -0.6 42,239 + +0.2 42,239 + +0.5 42,307 + +0.7 42,372 - SM_b20031 0.27 -3.4 42,372 - SM_b20031 0.27 -0.4 42,372 - SM_b20031 0.27 +1.3 42,372 - SM_b20031 0.27 +0.1
Or see this region's nucleotide sequence