Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20023

Experiment: copper (II) chloride 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20022 and SM_b20023 are separated by 76 nucleotidesSM_b20023 and SM_b20024 are separated by 16 nucleotides SM_b20022: SM_b20022 - hypothetical protein, at 30,658 to 31,224 _b20022 SM_b20023: SM_b20023 - hypothetical protein, at 31,301 to 34,918 _b20023 SM_b20024: SM_b20024 - ribosomal large subunit pseudouridine synthase B, at 34,935 to 35,897 _b20024 Position (kb) 31 32 33 34 35Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 30.370 kb on + strandat 30.371 kb on - strandat 30.371 kb on - strandat 30.471 kb on + strandat 30.471 kb on + strandat 30.471 kb on + strandat 30.471 kb on + strandat 30.471 kb on + strandat 30.472 kb on - strandat 31.134 kb on + strand, within SM_b20022at 31.135 kb on - strand, within SM_b20022at 31.135 kb on - strand, within SM_b20022at 31.138 kb on + strand, within SM_b20022at 31.139 kb on - strand, within SM_b20022at 31.139 kb on - strand, within SM_b20022at 31.247 kb on + strandat 31.248 kb on - strandat 31.248 kb on - strandat 31.302 kb on + strandat 31.318 kb on - strandat 31.372 kb on + strandat 31.537 kb on + strandat 31.725 kb on + strand, within SM_b20023at 31.725 kb on + strand, within SM_b20023at 31.725 kb on + strand, within SM_b20023at 31.726 kb on - strand, within SM_b20023at 31.835 kb on + strand, within SM_b20023at 31.835 kb on + strand, within SM_b20023at 31.836 kb on - strand, within SM_b20023at 31.836 kb on - strand, within SM_b20023at 31.836 kb on - strand, within SM_b20023at 31.836 kb on - strand, within SM_b20023at 31.965 kb on + strand, within SM_b20023at 31.965 kb on + strand, within SM_b20023at 31.966 kb on - strand, within SM_b20023at 31.966 kb on - strand, within SM_b20023at 31.966 kb on - strand, within SM_b20023at 31.966 kb on - strand, within SM_b20023at 31.966 kb on - strand, within SM_b20023at 31.966 kb on - strand, within SM_b20023at 31.966 kb on - strand, within SM_b20023at 32.188 kb on + strand, within SM_b20023at 32.188 kb on + strand, within SM_b20023at 32.190 kb on + strand, within SM_b20023at 32.190 kb on + strand, within SM_b20023at 32.190 kb on + strand, within SM_b20023at 32.191 kb on - strand, within SM_b20023at 32.191 kb on - strand, within SM_b20023at 32.191 kb on - strand, within SM_b20023at 32.191 kb on - strand, within SM_b20023at 32.390 kb on - strand, within SM_b20023at 32.391 kb on + strand, within SM_b20023at 32.391 kb on + strand, within SM_b20023at 32.391 kb on + strand, within SM_b20023at 32.391 kb on + strand, within SM_b20023at 32.392 kb on - strand, within SM_b20023at 32.392 kb on - strand, within SM_b20023at 32.447 kb on - strand, within SM_b20023at 32.562 kb on + strand, within SM_b20023at 32.563 kb on - strand, within SM_b20023at 32.735 kb on - strand, within SM_b20023at 32.735 kb on - strand, within SM_b20023at 33.308 kb on + strand, within SM_b20023at 33.465 kb on + strand, within SM_b20023at 33.502 kb on + strand, within SM_b20023at 33.592 kb on - strand, within SM_b20023at 33.592 kb on - strand, within SM_b20023at 34.009 kb on - strand, within SM_b20023at 34.248 kb on + strand, within SM_b20023at 34.249 kb on - strand, within SM_b20023at 34.249 kb on - strand, within SM_b20023at 34.272 kb on + strand, within SM_b20023at 34.273 kb on - strand, within SM_b20023at 34.309 kb on - strand, within SM_b20023at 34.309 kb on - strand, within SM_b20023at 34.343 kb on + strand, within SM_b20023at 34.402 kb on - strand, within SM_b20023at 34.407 kb on + strand, within SM_b20023at 34.408 kb on - strand, within SM_b20023at 34.408 kb on - strand, within SM_b20023at 34.408 kb on - strand, within SM_b20023at 34.463 kb on + strand, within SM_b20023at 34.538 kb on + strand, within SM_b20023at 34.538 kb on + strand, within SM_b20023at 34.539 kb on - strand, within SM_b20023at 34.552 kb on - strand, within SM_b20023at 34.605 kb on + strandat 34.873 kb on + strandat 34.874 kb on - strandat 35.066 kb on + strand, within SM_b20024at 35.066 kb on + strand, within SM_b20024at 35.067 kb on - strand, within SM_b20024at 35.067 kb on - strand, within SM_b20024at 35.067 kb on - strand, within SM_b20024at 35.067 kb on - strand, within SM_b20024at 35.365 kb on - strand, within SM_b20024at 35.576 kb on - strand, within SM_b20024at 35.576 kb on - strand, within SM_b20024at 35.578 kb on - strand, within SM_b20024at 35.578 kb on - strand, within SM_b20024at 35.578 kb on - strand, within SM_b20024at 35.578 kb on - strand, within SM_b20024at 35.578 kb on - strand, within SM_b20024at 35.872 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
remove
30,370 + +1.3
30,371 - -3.1
30,371 - -1.3
30,471 + -1.3
30,471 + -1.9
30,471 + -0.3
30,471 + +1.6
30,471 + +0.5
30,472 - +1.9
31,134 + SM_b20022 0.84 +0.6
31,135 - SM_b20022 0.84 -2.6
31,135 - SM_b20022 0.84 -0.2
31,138 + SM_b20022 0.85 -0.4
31,139 - SM_b20022 0.85 +0.5
31,139 - SM_b20022 0.85 +3.9
31,247 + +0.6
31,248 - -2.3
31,248 - +1.6
31,302 + +0.9
31,318 - +2.0
31,372 + +0.1
31,537 + -0.7
31,725 + SM_b20023 0.12 -0.7
31,725 + SM_b20023 0.12 +0.9
31,725 + SM_b20023 0.12 +1.3
31,726 - SM_b20023 0.12 -0.5
31,835 + SM_b20023 0.15 +0.1
31,835 + SM_b20023 0.15 +0.2
31,836 - SM_b20023 0.15 -1.1
31,836 - SM_b20023 0.15 +0.9
31,836 - SM_b20023 0.15 +0.7
31,836 - SM_b20023 0.15 -0.5
31,965 + SM_b20023 0.18 +1.3
31,965 + SM_b20023 0.18 +0.8
31,966 - SM_b20023 0.18 -1.1
31,966 - SM_b20023 0.18 +1.4
31,966 - SM_b20023 0.18 +0.3
31,966 - SM_b20023 0.18 +0.7
31,966 - SM_b20023 0.18 +0.7
31,966 - SM_b20023 0.18 -0.0
31,966 - SM_b20023 0.18 -1.7
32,188 + SM_b20023 0.25 +1.3
32,188 + SM_b20023 0.25 -0.3
32,190 + SM_b20023 0.25 -0.2
32,190 + SM_b20023 0.25 +1.1
32,190 + SM_b20023 0.25 +0.8
32,191 - SM_b20023 0.25 +0.5
32,191 - SM_b20023 0.25 -0.1
32,191 - SM_b20023 0.25 +0.1
32,191 - SM_b20023 0.25 -0.3
32,390 - SM_b20023 0.30 +1.3
32,391 + SM_b20023 0.30 +1.1
32,391 + SM_b20023 0.30 -0.4
32,391 + SM_b20023 0.30 +0.0
32,391 + SM_b20023 0.30 -2.4
32,392 - SM_b20023 0.30 +0.9
32,392 - SM_b20023 0.30 +0.2
32,447 - SM_b20023 0.32 +0.9
32,562 + SM_b20023 0.35 +0.2
32,563 - SM_b20023 0.35 +1.3
32,735 - SM_b20023 0.40 +0.9
32,735 - SM_b20023 0.40 +0.5
33,308 + SM_b20023 0.55 +0.1
33,465 + SM_b20023 0.60 -0.9
33,502 + SM_b20023 0.61 +0.6
33,592 - SM_b20023 0.63 -0.1
33,592 - SM_b20023 0.63 -0.8
34,009 - SM_b20023 0.75 +0.9
34,248 + SM_b20023 0.81 -4.0
34,249 - SM_b20023 0.81 +1.2
34,249 - SM_b20023 0.81 +0.1
34,272 + SM_b20023 0.82 +0.5
34,273 - SM_b20023 0.82 +2.0
34,309 - SM_b20023 0.83 -1.4
34,309 - SM_b20023 0.83 -1.8
34,343 + SM_b20023 0.84 +0.4
34,402 - SM_b20023 0.86 +3.1
34,407 + SM_b20023 0.86 -0.2
34,408 - SM_b20023 0.86 -0.4
34,408 - SM_b20023 0.86 +0.2
34,408 - SM_b20023 0.86 -1.5
34,463 + SM_b20023 0.87 -0.6
34,538 + SM_b20023 0.89 +0.9
34,538 + SM_b20023 0.89 +0.4
34,539 - SM_b20023 0.89 -0.7
34,552 - SM_b20023 0.90 +1.1
34,605 + +0.1
34,873 + -0.0
34,874 - +1.5
35,066 + SM_b20024 0.14 -0.6
35,066 + SM_b20024 0.14 -0.3
35,067 - SM_b20024 0.14 -0.3
35,067 - SM_b20024 0.14 +1.4
35,067 - SM_b20024 0.14 +1.0
35,067 - SM_b20024 0.14 -0.1
35,365 - SM_b20024 0.45 +0.3
35,576 - SM_b20024 0.67 +1.0
35,576 - SM_b20024 0.67 +0.6
35,578 - SM_b20024 0.67 +0.6
35,578 - SM_b20024 0.67 +0.4
35,578 - SM_b20024 0.67 +0.5
35,578 - SM_b20024 0.67 -2.7
35,578 - SM_b20024 0.67 -0.4
35,872 - +0.4

Or see this region's nucleotide sequence