Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20017 and SM_b20018 are separated by 249 nucleotides SM_b20018 and SM_b20019 are separated by 91 nucleotides
SM_b20017: SM_b20017 - sugar ABC transporter ATP-binding protein, at 23,337 to 24,842
_b20017
SM_b20018: SM_b20018 - sugar ABC transporter substrate-binding protein, at 25,092 to 26,114
_b20018
SM_b20019: SM_b20019 - dihydrolipoamide succinyltransferase, at 26,206 to 27,342
_b20019
Position (kb)
25
26
27 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 24.473 kb on - strand, within SM_b20017 at 24.473 kb on - strand, within SM_b20017 at 24.592 kb on + strand, within SM_b20017 at 24.592 kb on + strand, within SM_b20017 at 24.592 kb on + strand, within SM_b20017 at 24.806 kb on - strand at 24.806 kb on - strand at 25.139 kb on - strand at 25.144 kb on + strand at 25.144 kb on + strand at 25.144 kb on + strand at 25.145 kb on - strand at 25.145 kb on - strand at 25.220 kb on - strand, within SM_b20018 at 25.489 kb on + strand, within SM_b20018 at 25.653 kb on + strand, within SM_b20018 at 25.654 kb on - strand, within SM_b20018 at 25.654 kb on - strand, within SM_b20018 at 25.654 kb on - strand, within SM_b20018 at 25.654 kb on - strand, within SM_b20018 at 25.732 kb on + strand, within SM_b20018 at 25.732 kb on + strand, within SM_b20018 at 25.732 kb on + strand, within SM_b20018 at 25.732 kb on + strand, within SM_b20018 at 25.733 kb on - strand, within SM_b20018 at 25.880 kb on + strand, within SM_b20018 at 26.036 kb on + strand at 26.114 kb on + strand at 26.208 kb on - strand at 26.208 kb on - strand at 26.303 kb on + strand at 26.304 kb on - strand at 26.304 kb on - strand at 26.304 kb on - strand at 26.615 kb on - strand, within SM_b20019 at 26.615 kb on - strand, within SM_b20019 at 26.615 kb on - strand, within SM_b20019 at 26.622 kb on + strand, within SM_b20019 at 26.623 kb on - strand, within SM_b20019 at 26.718 kb on - strand, within SM_b20019 at 26.726 kb on + strand, within SM_b20019 at 26.850 kb on + strand, within SM_b20019 at 26.850 kb on + strand, within SM_b20019 at 26.851 kb on - strand, within SM_b20019 at 26.851 kb on - strand, within SM_b20019 at 26.851 kb on - strand, within SM_b20019 at 26.888 kb on - strand, within SM_b20019 at 26.888 kb on - strand, within SM_b20019 at 27.041 kb on + strand, within SM_b20019 at 27.042 kb on - strand, within SM_b20019 at 27.042 kb on - strand, within SM_b20019
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 24,473 - SM_b20017 0.75 -0.2 24,473 - SM_b20017 0.75 -0.1 24,592 + SM_b20017 0.83 -2.4 24,592 + SM_b20017 0.83 -0.6 24,592 + SM_b20017 0.83 -1.1 24,806 - -3.0 24,806 - +0.2 25,139 - +0.7 25,144 + +0.3 25,144 + -0.2 25,144 + +0.8 25,145 - +0.7 25,145 - -0.7 25,220 - SM_b20018 0.13 +0.2 25,489 + SM_b20018 0.39 -2.1 25,653 + SM_b20018 0.55 -2.8 25,654 - SM_b20018 0.55 -2.2 25,654 - SM_b20018 0.55 -1.7 25,654 - SM_b20018 0.55 +0.4 25,654 - SM_b20018 0.55 -0.7 25,732 + SM_b20018 0.63 -1.1 25,732 + SM_b20018 0.63 -0.6 25,732 + SM_b20018 0.63 -0.3 25,732 + SM_b20018 0.63 -1.1 25,733 - SM_b20018 0.63 +1.6 25,880 + SM_b20018 0.77 -0.3 26,036 + -3.7 26,114 + +1.1 26,208 - +0.6 26,208 - +1.3 26,303 + +1.3 26,304 - -0.1 26,304 - +2.6 26,304 - -1.3 26,615 - SM_b20019 0.36 +1.3 26,615 - SM_b20019 0.36 -0.8 26,615 - SM_b20019 0.36 +0.6 26,622 + SM_b20019 0.37 -3.0 26,623 - SM_b20019 0.37 +1.5 26,718 - SM_b20019 0.45 +0.7 26,726 + SM_b20019 0.46 +0.6 26,850 + SM_b20019 0.57 +0.3 26,850 + SM_b20019 0.57 +1.5 26,851 - SM_b20019 0.57 +0.3 26,851 - SM_b20019 0.57 -1.3 26,851 - SM_b20019 0.57 -1.7 26,888 - SM_b20019 0.60 -0.1 26,888 - SM_b20019 0.60 +0.3 27,041 + SM_b20019 0.73 +0.6 27,042 - SM_b20019 0.74 -4.0 27,042 - SM_b20019 0.74 -0.4
Or see this region's nucleotide sequence