Experiment: R2A 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS28480 and RR42_RS28485 are separated by 65 nucleotides RR42_RS28485 and RR42_RS28490 are separated by 191 nucleotides RR42_RS28490 and RR42_RS28495 are separated by 55 nucleotides RR42_RS28495 and RR42_RS28500 are separated by 80 nucleotides
RR42_RS28480: RR42_RS28480 - DSBA oxidoreductase, at 1,748,311 to 1,748,904
_RS28480
RR42_RS28485: RR42_RS28485 - short-chain dehydrogenase, at 1,748,970 to 1,749,698
_RS28485
RR42_RS28490: RR42_RS28490 - hypothetical protein, at 1,749,890 to 1,750,270
_RS28490
RR42_RS28495: RR42_RS28495 - toluene tolerance protein, at 1,750,326 to 1,750,958
_RS28495
RR42_RS28500: RR42_RS28500 - hypothetical protein, at 1,751,039 to 1,751,809
_RS28500
Position (kb) 1749
1750
1751 Strain fitness (log2 ratio) -1
0
1
2 at 1749.046 kb on + strand, within RR42_RS28485 at 1749.046 kb on + strand, within RR42_RS28485 at 1749.612 kb on - strand, within RR42_RS28485 at 1749.612 kb on - strand, within RR42_RS28485 at 1749.835 kb on - strand at 1750.031 kb on + strand, within RR42_RS28490 at 1750.031 kb on + strand, within RR42_RS28490 at 1750.206 kb on + strand, within RR42_RS28490 at 1750.206 kb on + strand, within RR42_RS28490 at 1750.206 kb on + strand, within RR42_RS28490 at 1750.206 kb on + strand, within RR42_RS28490 at 1750.207 kb on - strand, within RR42_RS28490 at 1750.288 kb on + strand at 1750.306 kb on + strand at 1750.307 kb on - strand at 1750.530 kb on + strand, within RR42_RS28495 at 1750.530 kb on + strand, within RR42_RS28495 at 1750.530 kb on + strand, within RR42_RS28495 at 1750.531 kb on - strand, within RR42_RS28495 at 1750.644 kb on + strand, within RR42_RS28495 at 1750.644 kb on + strand, within RR42_RS28495 at 1750.783 kb on - strand, within RR42_RS28495 at 1750.819 kb on - strand, within RR42_RS28495 at 1750.819 kb on - strand, within RR42_RS28495 at 1750.928 kb on + strand at 1750.957 kb on - strand at 1751.045 kb on + strand at 1751.046 kb on - strand at 1751.046 kb on - strand at 1751.209 kb on + strand, within RR42_RS28500 at 1751.209 kb on + strand, within RR42_RS28500 at 1751.210 kb on - strand, within RR42_RS28500 at 1751.210 kb on - strand, within RR42_RS28500 at 1751.240 kb on + strand, within RR42_RS28500
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 23C remove 1,749,046 + RR42_RS28485 0.10 -0.2 1,749,046 + RR42_RS28485 0.10 +0.4 1,749,612 - RR42_RS28485 0.88 -0.1 1,749,612 - RR42_RS28485 0.88 +0.1 1,749,835 - -0.8 1,750,031 + RR42_RS28490 0.37 +0.3 1,750,031 + RR42_RS28490 0.37 +1.4 1,750,206 + RR42_RS28490 0.83 +0.9 1,750,206 + RR42_RS28490 0.83 -0.3 1,750,206 + RR42_RS28490 0.83 +0.4 1,750,206 + RR42_RS28490 0.83 +0.7 1,750,207 - RR42_RS28490 0.83 -0.2 1,750,288 + -0.7 1,750,306 + -0.4 1,750,307 - +0.2 1,750,530 + RR42_RS28495 0.32 +0.1 1,750,530 + RR42_RS28495 0.32 -0.1 1,750,530 + RR42_RS28495 0.32 +0.2 1,750,531 - RR42_RS28495 0.32 -0.1 1,750,644 + RR42_RS28495 0.50 -0.9 1,750,644 + RR42_RS28495 0.50 -0.6 1,750,783 - RR42_RS28495 0.72 +0.5 1,750,819 - RR42_RS28495 0.78 -0.3 1,750,819 - RR42_RS28495 0.78 +1.1 1,750,928 + +0.2 1,750,957 - +0.1 1,751,045 + +0.4 1,751,046 - +0.4 1,751,046 - -1.4 1,751,209 + RR42_RS28500 0.22 +0.1 1,751,209 + RR42_RS28500 0.22 -0.6 1,751,210 - RR42_RS28500 0.22 +1.9 1,751,210 - RR42_RS28500 0.22 -0.6 1,751,240 + RR42_RS28500 0.26 -1.0
Or see this region's nucleotide sequence