Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25945

Experiment: R2A 23C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS25940 and RR42_RS25945 are separated by 163 nucleotidesRR42_RS25945 and RR42_RS25950 are separated by 16 nucleotides RR42_RS25940: RR42_RS25940 - AraC family transcriptional regulator, at 1,161,606 to 1,162,523 _RS25940 RR42_RS25945: RR42_RS25945 - MFS transporter, at 1,162,687 to 1,164,318 _RS25945 RR42_RS25950: RR42_RS25950 - hypothetical protein, at 1,164,335 to 1,165,504 _RS25950 Position (kb) 1162 1163 1164 1165Strain fitness (log2 ratio) -1 0 1 2at 1161.764 kb on + strand, within RR42_RS25940at 1161.764 kb on + strand, within RR42_RS25940at 1161.872 kb on + strand, within RR42_RS25940at 1161.872 kb on + strand, within RR42_RS25940at 1161.872 kb on + strand, within RR42_RS25940at 1161.882 kb on + strand, within RR42_RS25940at 1161.882 kb on + strand, within RR42_RS25940at 1161.882 kb on + strand, within RR42_RS25940at 1161.882 kb on + strand, within RR42_RS25940at 1161.882 kb on + strand, within RR42_RS25940at 1161.882 kb on + strand, within RR42_RS25940at 1161.883 kb on - strand, within RR42_RS25940at 1161.908 kb on + strand, within RR42_RS25940at 1161.908 kb on + strand, within RR42_RS25940at 1161.909 kb on - strand, within RR42_RS25940at 1161.988 kb on + strand, within RR42_RS25940at 1161.988 kb on + strand, within RR42_RS25940at 1161.989 kb on - strand, within RR42_RS25940at 1162.141 kb on - strand, within RR42_RS25940at 1162.141 kb on - strand, within RR42_RS25940at 1162.141 kb on - strand, within RR42_RS25940at 1162.593 kb on + strandat 1162.594 kb on - strandat 1162.595 kb on + strandat 1162.595 kb on + strandat 1162.595 kb on + strandat 1162.596 kb on - strandat 1162.600 kb on - strandat 1162.778 kb on - strandat 1162.844 kb on + strandat 1162.845 kb on - strandat 1162.927 kb on + strand, within RR42_RS25945at 1162.982 kb on - strand, within RR42_RS25945at 1163.199 kb on + strand, within RR42_RS25945at 1163.200 kb on - strand, within RR42_RS25945at 1163.200 kb on - strand, within RR42_RS25945at 1163.389 kb on + strand, within RR42_RS25945at 1163.389 kb on + strand, within RR42_RS25945at 1163.390 kb on - strand, within RR42_RS25945at 1163.659 kb on + strand, within RR42_RS25945at 1163.660 kb on - strand, within RR42_RS25945at 1163.660 kb on - strand, within RR42_RS25945at 1163.885 kb on + strand, within RR42_RS25945at 1164.255 kb on + strandat 1164.255 kb on + strandat 1164.255 kb on + strandat 1164.255 kb on + strandat 1164.256 kb on - strandat 1164.256 kb on - strandat 1164.256 kb on - strandat 1164.579 kb on + strand, within RR42_RS25950at 1164.579 kb on + strand, within RR42_RS25950at 1164.580 kb on - strand, within RR42_RS25950at 1164.580 kb on - strand, within RR42_RS25950at 1164.580 kb on - strand, within RR42_RS25950at 1164.580 kb on - strand, within RR42_RS25950at 1164.580 kb on - strand, within RR42_RS25950at 1164.580 kb on - strand, within RR42_RS25950at 1164.580 kb on - strand, within RR42_RS25950at 1164.580 kb on - strand, within RR42_RS25950at 1164.580 kb on - strand, within RR42_RS25950at 1164.582 kb on + strand, within RR42_RS25950at 1164.582 kb on + strand, within RR42_RS25950at 1164.735 kb on + strand, within RR42_RS25950at 1164.735 kb on + strand, within RR42_RS25950at 1164.875 kb on + strand, within RR42_RS25950at 1165.218 kb on - strand, within RR42_RS25950at 1165.312 kb on - strand, within RR42_RS25950

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A 23C
remove
1,161,764 + RR42_RS25940 0.17 +1.5
1,161,764 + RR42_RS25940 0.17 -0.3
1,161,872 + RR42_RS25940 0.29 -0.3
1,161,872 + RR42_RS25940 0.29 -0.0
1,161,872 + RR42_RS25940 0.29 +0.9
1,161,882 + RR42_RS25940 0.30 +0.3
1,161,882 + RR42_RS25940 0.30 +0.7
1,161,882 + RR42_RS25940 0.30 -0.4
1,161,882 + RR42_RS25940 0.30 +0.5
1,161,882 + RR42_RS25940 0.30 -0.2
1,161,882 + RR42_RS25940 0.30 +0.7
1,161,883 - RR42_RS25940 0.30 +0.0
1,161,908 + RR42_RS25940 0.33 -0.0
1,161,908 + RR42_RS25940 0.33 +0.5
1,161,909 - RR42_RS25940 0.33 -0.4
1,161,988 + RR42_RS25940 0.42 +0.7
1,161,988 + RR42_RS25940 0.42 -0.5
1,161,989 - RR42_RS25940 0.42 +0.1
1,162,141 - RR42_RS25940 0.58 +0.8
1,162,141 - RR42_RS25940 0.58 -0.3
1,162,141 - RR42_RS25940 0.58 +0.3
1,162,593 + +0.6
1,162,594 - +0.3
1,162,595 + -0.7
1,162,595 + +0.5
1,162,595 + -0.1
1,162,596 - +0.4
1,162,600 - -0.5
1,162,778 - -0.2
1,162,844 + -0.1
1,162,845 - +0.5
1,162,927 + RR42_RS25945 0.15 +0.3
1,162,982 - RR42_RS25945 0.18 +0.3
1,163,199 + RR42_RS25945 0.31 +0.0
1,163,200 - RR42_RS25945 0.31 +1.0
1,163,200 - RR42_RS25945 0.31 +0.2
1,163,389 + RR42_RS25945 0.43 -0.1
1,163,389 + RR42_RS25945 0.43 +1.3
1,163,390 - RR42_RS25945 0.43 -0.5
1,163,659 + RR42_RS25945 0.60 +0.7
1,163,660 - RR42_RS25945 0.60 -0.4
1,163,660 - RR42_RS25945 0.60 +0.7
1,163,885 + RR42_RS25945 0.73 -0.3
1,164,255 + +0.7
1,164,255 + -1.3
1,164,255 + -0.2
1,164,255 + -0.2
1,164,256 - +0.2
1,164,256 - -0.1
1,164,256 - +0.3
1,164,579 + RR42_RS25950 0.21 +0.5
1,164,579 + RR42_RS25950 0.21 +1.4
1,164,580 - RR42_RS25950 0.21 -0.1
1,164,580 - RR42_RS25950 0.21 -0.2
1,164,580 - RR42_RS25950 0.21 +1.9
1,164,580 - RR42_RS25950 0.21 +0.1
1,164,580 - RR42_RS25950 0.21 -0.1
1,164,580 - RR42_RS25950 0.21 -1.6
1,164,580 - RR42_RS25950 0.21 -0.1
1,164,580 - RR42_RS25950 0.21 -0.1
1,164,580 - RR42_RS25950 0.21 +0.7
1,164,582 + RR42_RS25950 0.21 +1.5
1,164,582 + RR42_RS25950 0.21 -0.0
1,164,735 + RR42_RS25950 0.34 +1.3
1,164,735 + RR42_RS25950 0.34 +0.1
1,164,875 + RR42_RS25950 0.46 +0.2
1,165,218 - RR42_RS25950 0.75 +0.5
1,165,312 - RR42_RS25950 0.84 +0.2

Or see this region's nucleotide sequence