Experiment: R2A 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24820 and RR42_RS24825 are separated by 129 nucleotides RR42_RS24825 and RR42_RS24830 are separated by 35 nucleotides RR42_RS24830 and RR42_RS24835 are separated by 34 nucleotides
RR42_RS24820: RR42_RS24820 - hypothetical protein, at 905,688 to 906,893
_RS24820
RR42_RS24825: RR42_RS24825 - carnitine dehydratase, at 907,023 to 908,177
_RS24825
RR42_RS24830: RR42_RS24830 - 3-oxoacyl-ACP reductase, at 908,213 to 909,013
_RS24830
RR42_RS24835: RR42_RS24835 - carnitine dehydratase, at 909,048 to 910,385
_RS24835
Position (kb) 907
908
909 Strain fitness (log2 ratio) -2
-1
0
1 at 906.062 kb on - strand, within RR42_RS24820 at 906.062 kb on - strand, within RR42_RS24820 at 906.334 kb on - strand, within RR42_RS24820 at 906.402 kb on + strand, within RR42_RS24820 at 906.892 kb on - strand at 907.078 kb on + strand at 907.219 kb on + strand, within RR42_RS24825 at 907.368 kb on + strand, within RR42_RS24825 at 907.368 kb on + strand, within RR42_RS24825 at 907.434 kb on + strand, within RR42_RS24825 at 907.434 kb on + strand, within RR42_RS24825 at 907.434 kb on + strand, within RR42_RS24825 at 907.435 kb on - strand, within RR42_RS24825 at 907.435 kb on - strand, within RR42_RS24825 at 907.435 kb on - strand, within RR42_RS24825 at 907.533 kb on + strand, within RR42_RS24825 at 907.534 kb on - strand, within RR42_RS24825 at 907.644 kb on + strand, within RR42_RS24825 at 907.645 kb on - strand, within RR42_RS24825 at 907.645 kb on - strand, within RR42_RS24825 at 907.716 kb on + strand, within RR42_RS24825 at 907.716 kb on + strand, within RR42_RS24825 at 907.716 kb on + strand, within RR42_RS24825 at 907.717 kb on - strand, within RR42_RS24825 at 907.717 kb on - strand, within RR42_RS24825 at 907.726 kb on - strand, within RR42_RS24825 at 907.787 kb on + strand, within RR42_RS24825 at 907.787 kb on + strand, within RR42_RS24825 at 908.262 kb on + strand at 908.263 kb on - strand at 908.306 kb on - strand, within RR42_RS24830 at 908.355 kb on + strand, within RR42_RS24830 at 908.355 kb on + strand, within RR42_RS24830 at 908.356 kb on - strand, within RR42_RS24830 at 908.356 kb on - strand, within RR42_RS24830 at 909.125 kb on + strand at 909.126 kb on - strand at 909.126 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 23C remove 906,062 - RR42_RS24820 0.31 -0.8 906,062 - RR42_RS24820 0.31 +0.1 906,334 - RR42_RS24820 0.54 -1.5 906,402 + RR42_RS24820 0.59 -1.1 906,892 - +0.9 907,078 + -0.6 907,219 + RR42_RS24825 0.17 +1.5 907,368 + RR42_RS24825 0.30 +0.1 907,368 + RR42_RS24825 0.30 +0.1 907,434 + RR42_RS24825 0.36 +1.2 907,434 + RR42_RS24825 0.36 -0.1 907,434 + RR42_RS24825 0.36 -0.4 907,435 - RR42_RS24825 0.36 +0.1 907,435 - RR42_RS24825 0.36 -0.2 907,435 - RR42_RS24825 0.36 -0.2 907,533 + RR42_RS24825 0.44 -0.0 907,534 - RR42_RS24825 0.44 -1.9 907,644 + RR42_RS24825 0.54 +1.1 907,645 - RR42_RS24825 0.54 +1.1 907,645 - RR42_RS24825 0.54 +0.5 907,716 + RR42_RS24825 0.60 -0.2 907,716 + RR42_RS24825 0.60 -1.5 907,716 + RR42_RS24825 0.60 +0.6 907,717 - RR42_RS24825 0.60 -0.4 907,717 - RR42_RS24825 0.60 +0.5 907,726 - RR42_RS24825 0.61 -0.5 907,787 + RR42_RS24825 0.66 -0.8 907,787 + RR42_RS24825 0.66 +0.5 908,262 + -0.0 908,263 - +0.8 908,306 - RR42_RS24830 0.12 -0.9 908,355 + RR42_RS24830 0.18 +0.9 908,355 + RR42_RS24830 0.18 +0.1 908,356 - RR42_RS24830 0.18 -0.2 908,356 - RR42_RS24830 0.18 -0.8 909,125 + -2.0 909,126 - -1.0 909,126 - +0.1
Or see this region's nucleotide sequence