Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22990

Experiment: R2A 23C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22985 and RR42_RS22990 are separated by 320 nucleotidesRR42_RS22990 and RR42_RS22995 are separated by 113 nucleotidesRR42_RS22995 and RR42_RS23000 are separated by 189 nucleotides RR42_RS22985: RR42_RS22985 - 16S ribosomal RNA, at 489,212 to 490,785 _RS22985 RR42_RS22990: RR42_RS22990 - 23S ribosomal RNA, at 491,106 to 494,102 _RS22990 RR42_RS22995: RR42_RS22995 - 5S ribosomal RNA, at 494,216 to 494,328 _RS22995 RR42_RS23000: RR42_RS23000 - acylaldehyde oxidase, at 494,518 to 496,803 _RS23000 Position (kb) 491 492 493 494 495Strain fitness (log2 ratio) -1 0 1at 490.798 kb on + strandat 492.248 kb on + strand, within RR42_RS22990at 492.248 kb on + strand, within RR42_RS22990at 492.286 kb on + strand, within RR42_RS22990at 492.365 kb on + strand, within RR42_RS22990at 494.357 kb on + strandat 494.714 kb on + strandat 494.715 kb on - strandat 494.924 kb on + strand, within RR42_RS23000at 494.924 kb on + strand, within RR42_RS23000at 494.925 kb on - strand, within RR42_RS23000at 494.925 kb on - strand, within RR42_RS23000at 494.925 kb on - strand, within RR42_RS23000at 494.939 kb on + strand, within RR42_RS23000at 494.939 kb on + strand, within RR42_RS23000at 494.940 kb on - strand, within RR42_RS23000

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A 23C
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490,798 + +1.0
492,248 + RR42_RS22990 0.38 -0.7
492,248 + RR42_RS22990 0.38 -1.4
492,286 + RR42_RS22990 0.39 -0.0
492,365 + RR42_RS22990 0.42 -0.8
494,357 + -0.6
494,714 + +0.1
494,715 - +0.2
494,924 + RR42_RS23000 0.18 +0.6
494,924 + RR42_RS23000 0.18 -0.3
494,925 - RR42_RS23000 0.18 +0.0
494,925 - RR42_RS23000 0.18 +1.1
494,925 - RR42_RS23000 0.18 +0.3
494,939 + RR42_RS23000 0.18 +0.4
494,939 + RR42_RS23000 0.18 -0.7
494,940 - RR42_RS23000 0.18 -1.2

Or see this region's nucleotide sequence