Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06135

Experiment: R2A 23C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS06125 and RR42_RS06130 are separated by 187 nucleotidesRR42_RS06130 and RR42_RS06135 are separated by 262 nucleotidesRR42_RS06135 and RR42_RS06140 are separated by 95 nucleotides RR42_RS06125: RR42_RS06125 - phosphogluconate dehydratase, at 1,345,359 to 1,347,245 _RS06125 RR42_RS06130: RR42_RS06130 - Gluconokinase (EC 2.7.1.12) (from data), at 1,347,433 to 1,347,942 _RS06130 RR42_RS06135: RR42_RS06135 - hypothetical protein, at 1,348,205 to 1,349,677 _RS06135 RR42_RS06140: RR42_RS06140 - hypothetical protein, at 1,349,773 to 1,350,726 _RS06140 Position (kb) 1348 1349 1350Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1347.244 kb on - strandat 1347.244 kb on - strandat 1347.439 kb on + strandat 1347.439 kb on + strandat 1347.439 kb on + strandat 1347.439 kb on + strandat 1347.439 kb on + strandat 1347.439 kb on + strandat 1347.439 kb on + strandat 1347.439 kb on + strandat 1347.440 kb on - strandat 1347.663 kb on + strand, within RR42_RS06130at 1347.734 kb on - strand, within RR42_RS06130at 1347.734 kb on - strand, within RR42_RS06130at 1347.734 kb on - strand, within RR42_RS06130at 1347.734 kb on - strand, within RR42_RS06130at 1347.989 kb on + strandat 1347.990 kb on - strandat 1348.039 kb on + strandat 1348.040 kb on - strandat 1348.040 kb on - strandat 1348.040 kb on - strandat 1348.040 kb on - strandat 1348.040 kb on - strandat 1348.040 kb on - strandat 1348.040 kb on - strandat 1348.040 kb on - strandat 1348.043 kb on + strandat 1348.043 kb on + strandat 1348.044 kb on - strandat 1348.044 kb on - strandat 1348.048 kb on + strandat 1348.048 kb on + strandat 1348.049 kb on - strandat 1348.049 kb on - strandat 1348.051 kb on - strandat 1348.307 kb on + strandat 1348.307 kb on + strandat 1348.308 kb on - strandat 1348.308 kb on - strandat 1348.308 kb on - strandat 1348.308 kb on - strandat 1348.561 kb on + strand, within RR42_RS06135at 1348.561 kb on + strand, within RR42_RS06135at 1348.561 kb on + strand, within RR42_RS06135at 1348.565 kb on + strand, within RR42_RS06135at 1348.565 kb on + strand, within RR42_RS06135at 1348.566 kb on - strand, within RR42_RS06135at 1348.617 kb on - strand, within RR42_RS06135at 1348.632 kb on - strand, within RR42_RS06135at 1348.669 kb on + strand, within RR42_RS06135at 1348.673 kb on + strand, within RR42_RS06135at 1348.674 kb on - strand, within RR42_RS06135at 1348.698 kb on + strand, within RR42_RS06135at 1348.699 kb on - strand, within RR42_RS06135at 1348.699 kb on - strand, within RR42_RS06135at 1348.699 kb on - strand, within RR42_RS06135at 1348.724 kb on + strand, within RR42_RS06135at 1348.766 kb on + strand, within RR42_RS06135at 1348.766 kb on + strand, within RR42_RS06135at 1348.766 kb on + strandat 1348.766 kb on + strand, within RR42_RS06135at 1348.767 kb on - strand, within RR42_RS06135at 1348.767 kb on - strand, within RR42_RS06135at 1348.847 kb on + strand, within RR42_RS06135at 1348.848 kb on - strand, within RR42_RS06135at 1348.897 kb on - strand, within RR42_RS06135at 1348.934 kb on + strand, within RR42_RS06135at 1348.934 kb on + strand, within RR42_RS06135at 1348.935 kb on - strand, within RR42_RS06135at 1348.935 kb on - strand, within RR42_RS06135at 1348.935 kb on - strand, within RR42_RS06135at 1349.013 kb on + strand, within RR42_RS06135at 1349.030 kb on + strand, within RR42_RS06135at 1349.030 kb on + strand, within RR42_RS06135at 1349.031 kb on - strand, within RR42_RS06135at 1349.072 kb on + strand, within RR42_RS06135at 1349.073 kb on - strand, within RR42_RS06135at 1349.222 kb on + strand, within RR42_RS06135at 1349.228 kb on + strand, within RR42_RS06135at 1349.228 kb on + strand, within RR42_RS06135at 1349.229 kb on - strand, within RR42_RS06135at 1349.252 kb on + strand, within RR42_RS06135at 1349.252 kb on + strand, within RR42_RS06135at 1349.291 kb on + strand, within RR42_RS06135at 1349.291 kb on + strand, within RR42_RS06135at 1349.291 kb on + strand, within RR42_RS06135at 1349.291 kb on + strand, within RR42_RS06135at 1349.291 kb on + strand, within RR42_RS06135at 1349.292 kb on - strand, within RR42_RS06135at 1349.292 kb on - strand, within RR42_RS06135at 1349.292 kb on - strand, within RR42_RS06135at 1349.292 kb on - strand, within RR42_RS06135at 1349.292 kb on - strand, within RR42_RS06135at 1349.292 kb on - strand, within RR42_RS06135at 1349.292 kb on - strand, within RR42_RS06135at 1349.321 kb on + strand, within RR42_RS06135at 1349.321 kb on + strand, within RR42_RS06135at 1349.321 kb on + strand, within RR42_RS06135at 1349.322 kb on - strand, within RR42_RS06135at 1349.322 kb on - strand, within RR42_RS06135at 1349.322 kb on - strand, within RR42_RS06135at 1349.322 kb on - strand, within RR42_RS06135at 1349.322 kb on - strand, within RR42_RS06135at 1349.460 kb on - strand, within RR42_RS06135at 1349.502 kb on - strand, within RR42_RS06135at 1349.697 kb on + strandat 1349.697 kb on + strandat 1349.698 kb on - strandat 1349.698 kb on - strandat 1349.779 kb on - strandat 1349.815 kb on + strandat 1349.860 kb on + strandat 1349.926 kb on - strand, within RR42_RS06140at 1349.926 kb on - strand, within RR42_RS06140at 1349.960 kb on - strand, within RR42_RS06140at 1350.415 kb on + strand, within RR42_RS06140at 1350.415 kb on + strand, within RR42_RS06140at 1350.415 kb on + strand, within RR42_RS06140at 1350.416 kb on - strand, within RR42_RS06140at 1350.428 kb on - strand, within RR42_RS06140at 1350.428 kb on - strand, within RR42_RS06140at 1350.428 kb on - strand, within RR42_RS06140at 1350.601 kb on + strand, within RR42_RS06140at 1350.602 kb on - strand, within RR42_RS06140at 1350.643 kb on + strandat 1350.643 kb on + strandat 1350.644 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A 23C
remove
1,347,244 - +0.4
1,347,244 - +0.0
1,347,439 + -1.8
1,347,439 + +0.4
1,347,439 + -0.5
1,347,439 + +0.3
1,347,439 + -0.0
1,347,439 + -0.4
1,347,439 + +0.3
1,347,439 + +0.1
1,347,440 - -1.0
1,347,663 + RR42_RS06130 0.45 +0.0
1,347,734 - RR42_RS06130 0.59 -0.4
1,347,734 - RR42_RS06130 0.59 -0.4
1,347,734 - RR42_RS06130 0.59 -0.1
1,347,734 - RR42_RS06130 0.59 +1.0
1,347,989 + +0.6
1,347,990 - -2.1
1,348,039 + -0.6
1,348,040 - +0.2
1,348,040 - +0.6
1,348,040 - +0.0
1,348,040 - -0.6
1,348,040 - -0.4
1,348,040 - -0.2
1,348,040 - -0.5
1,348,040 - -0.8
1,348,043 + -0.9
1,348,043 + -1.3
1,348,044 - -0.4
1,348,044 - -0.2
1,348,048 + -0.4
1,348,048 + -0.2
1,348,049 - -0.5
1,348,049 - +0.4
1,348,051 - +0.9
1,348,307 + -0.7
1,348,307 + -0.9
1,348,308 - +0.2
1,348,308 - -0.4
1,348,308 - -0.4
1,348,308 - -0.7
1,348,561 + RR42_RS06135 0.24 +0.3
1,348,561 + RR42_RS06135 0.24 -0.0
1,348,561 + RR42_RS06135 0.24 -0.2
1,348,565 + RR42_RS06135 0.24 +0.7
1,348,565 + RR42_RS06135 0.24 +0.1
1,348,566 - RR42_RS06135 0.25 +1.0
1,348,617 - RR42_RS06135 0.28 +0.2
1,348,632 - RR42_RS06135 0.29 +2.0
1,348,669 + RR42_RS06135 0.32 -0.0
1,348,673 + RR42_RS06135 0.32 +0.4
1,348,674 - RR42_RS06135 0.32 -0.6
1,348,698 + RR42_RS06135 0.33 +0.2
1,348,699 - RR42_RS06135 0.34 +0.8
1,348,699 - RR42_RS06135 0.34 +0.8
1,348,699 - RR42_RS06135 0.34 -0.3
1,348,724 + RR42_RS06135 0.35 -0.4
1,348,766 + RR42_RS06135 0.38 -0.6
1,348,766 + RR42_RS06135 0.38 -2.0
1,348,766 + +0.8
1,348,766 + RR42_RS06135 0.38 +0.5
1,348,767 - RR42_RS06135 0.38 -0.3
1,348,767 - RR42_RS06135 0.38 +0.4
1,348,847 + RR42_RS06135 0.44 -0.2
1,348,848 - RR42_RS06135 0.44 +0.8
1,348,897 - RR42_RS06135 0.47 +0.2
1,348,934 + RR42_RS06135 0.49 -0.6
1,348,934 + RR42_RS06135 0.49 -0.4
1,348,935 - RR42_RS06135 0.50 -0.3
1,348,935 - RR42_RS06135 0.50 -0.2
1,348,935 - RR42_RS06135 0.50 +1.2
1,349,013 + RR42_RS06135 0.55 -0.1
1,349,030 + RR42_RS06135 0.56 -0.8
1,349,030 + RR42_RS06135 0.56 +0.2
1,349,031 - RR42_RS06135 0.56 +0.7
1,349,072 + RR42_RS06135 0.59 +0.4
1,349,073 - RR42_RS06135 0.59 +1.0
1,349,222 + RR42_RS06135 0.69 -0.4
1,349,228 + RR42_RS06135 0.69 -0.1
1,349,228 + RR42_RS06135 0.69 -0.3
1,349,229 - RR42_RS06135 0.70 -0.1
1,349,252 + RR42_RS06135 0.71 +0.3
1,349,252 + RR42_RS06135 0.71 +0.6
1,349,291 + RR42_RS06135 0.74 -1.8
1,349,291 + RR42_RS06135 0.74 -0.5
1,349,291 + RR42_RS06135 0.74 +0.2
1,349,291 + RR42_RS06135 0.74 +0.8
1,349,291 + RR42_RS06135 0.74 -0.7
1,349,292 - RR42_RS06135 0.74 +0.6
1,349,292 - RR42_RS06135 0.74 -1.1
1,349,292 - RR42_RS06135 0.74 +0.1
1,349,292 - RR42_RS06135 0.74 -0.5
1,349,292 - RR42_RS06135 0.74 +0.5
1,349,292 - RR42_RS06135 0.74 -0.4
1,349,292 - RR42_RS06135 0.74 +0.1
1,349,321 + RR42_RS06135 0.76 -0.7
1,349,321 + RR42_RS06135 0.76 +0.1
1,349,321 + RR42_RS06135 0.76 -0.4
1,349,322 - RR42_RS06135 0.76 +0.3
1,349,322 - RR42_RS06135 0.76 +0.1
1,349,322 - RR42_RS06135 0.76 +0.3
1,349,322 - RR42_RS06135 0.76 +0.5
1,349,322 - RR42_RS06135 0.76 +0.2
1,349,460 - RR42_RS06135 0.85 +0.1
1,349,502 - RR42_RS06135 0.88 -0.4
1,349,697 + +1.2
1,349,697 + +0.0
1,349,698 - +3.1
1,349,698 - +1.6
1,349,779 - +0.4
1,349,815 + -1.8
1,349,860 + -0.1
1,349,926 - RR42_RS06140 0.16 -0.8
1,349,926 - RR42_RS06140 0.16 +0.2
1,349,960 - RR42_RS06140 0.20 +0.6
1,350,415 + RR42_RS06140 0.67 -0.3
1,350,415 + RR42_RS06140 0.67 -0.9
1,350,415 + RR42_RS06140 0.67 +0.0
1,350,416 - RR42_RS06140 0.67 +0.8
1,350,428 - RR42_RS06140 0.69 -0.1
1,350,428 - RR42_RS06140 0.69 +0.8
1,350,428 - RR42_RS06140 0.69 -0.4
1,350,601 + RR42_RS06140 0.87 +0.8
1,350,602 - RR42_RS06140 0.87 +0.3
1,350,643 + +1.4
1,350,643 + -0.2
1,350,644 - -0.0

Or see this region's nucleotide sequence