Experiment: R2A 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03915 and RR42_RS03920 are separated by 55 nucleotides RR42_RS03920 and RR42_RS03925 are separated by 45 nucleotides
RR42_RS03915: RR42_RS03915 - hypothetical protein, at 862,503 to 864,788
_RS03915
RR42_RS03920: RR42_RS03920 - rubredoxin, at 864,844 to 865,020
_RS03920
RR42_RS03925: RR42_RS03925 - hypothetical protein, at 865,066 to 866,229
_RS03925
Position (kb) 864
865
866 Strain fitness (log2 ratio) -1
0
1
2 at 863.910 kb on + strand, within RR42_RS03915 at 863.911 kb on - strand, within RR42_RS03915 at 863.913 kb on + strand, within RR42_RS03915 at 864.085 kb on - strand, within RR42_RS03915 at 864.085 kb on - strand, within RR42_RS03915 at 864.165 kb on + strand, within RR42_RS03915 at 864.373 kb on - strand, within RR42_RS03915 at 864.373 kb on - strand, within RR42_RS03915 at 864.382 kb on - strand, within RR42_RS03915 at 864.390 kb on + strand, within RR42_RS03915 at 864.391 kb on - strand, within RR42_RS03915 at 864.391 kb on - strand, within RR42_RS03915 at 864.519 kb on + strand, within RR42_RS03915 at 864.786 kb on + strand at 864.787 kb on - strand at 864.813 kb on + strand at 864.813 kb on + strand at 864.813 kb on + strand at 864.813 kb on + strand at 864.814 kb on - strand at 864.814 kb on - strand at 864.814 kb on - strand at 864.875 kb on + strand, within RR42_RS03920 at 864.876 kb on - strand, within RR42_RS03920 at 864.876 kb on - strand, within RR42_RS03920 at 865.204 kb on + strand, within RR42_RS03925 at 865.676 kb on + strand, within RR42_RS03925 at 865.939 kb on + strand, within RR42_RS03925 at 866.011 kb on + strand, within RR42_RS03925
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 23C remove 863,910 + RR42_RS03915 0.62 -0.8 863,911 - RR42_RS03915 0.62 +0.9 863,913 + RR42_RS03915 0.62 +0.7 864,085 - RR42_RS03915 0.69 -0.8 864,085 - RR42_RS03915 0.69 -0.9 864,165 + RR42_RS03915 0.73 +0.0 864,373 - RR42_RS03915 0.82 -0.0 864,373 - RR42_RS03915 0.82 -0.5 864,382 - RR42_RS03915 0.82 +0.0 864,390 + RR42_RS03915 0.83 +0.6 864,391 - RR42_RS03915 0.83 -0.1 864,391 - RR42_RS03915 0.83 +2.1 864,519 + RR42_RS03915 0.88 -0.0 864,786 + +2.3 864,787 - -1.7 864,813 + -0.1 864,813 + -0.6 864,813 + +0.7 864,813 + -0.5 864,814 - +1.1 864,814 - +0.3 864,814 - +0.2 864,875 + RR42_RS03920 0.18 -0.7 864,876 - RR42_RS03920 0.18 -1.7 864,876 - RR42_RS03920 0.18 -0.5 865,204 + RR42_RS03925 0.12 -1.0 865,676 + RR42_RS03925 0.52 +0.0 865,939 + RR42_RS03925 0.75 +0.6 866,011 + RR42_RS03925 0.81 +1.0
Or see this region's nucleotide sequence