Experiment: R2A 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02265 and RR42_RS02270 are separated by 297 nucleotides RR42_RS02270 and RR42_RS02275 are separated by 119 nucleotides RR42_RS02275 and RR42_RS02280 are separated by 71 nucleotides
RR42_RS02265: RR42_RS02265 - excinuclease ABC subunit A, at 502,573 to 508,392
_RS02265
RR42_RS02270: RR42_RS02270 - hypothetical protein, at 508,690 to 508,974
_RS02270
RR42_RS02275: RR42_RS02275 - aspartate aminotransferase, at 509,094 to 510,287
_RS02275
RR42_RS02280: RR42_RS02280 - ABC transporter permease, at 510,359 to 511,807
_RS02280
Position (kb) 509
510
511 Strain fitness (log2 ratio) -1
0
1 at 508.126 kb on + strand at 508.126 kb on + strand at 508.127 kb on - strand at 508.127 kb on - strand at 508.871 kb on - strand, within RR42_RS02270 at 509.033 kb on + strand at 509.075 kb on + strand at 509.076 kb on - strand at 509.305 kb on - strand, within RR42_RS02275 at 509.305 kb on - strand, within RR42_RS02275 at 509.606 kb on + strand, within RR42_RS02275 at 509.606 kb on + strand, within RR42_RS02275 at 509.607 kb on - strand, within RR42_RS02275 at 509.730 kb on + strand, within RR42_RS02275 at 509.731 kb on - strand, within RR42_RS02275 at 509.731 kb on - strand, within RR42_RS02275 at 509.742 kb on + strand, within RR42_RS02275 at 509.743 kb on - strand, within RR42_RS02275 at 509.743 kb on - strand, within RR42_RS02275 at 509.917 kb on - strand, within RR42_RS02275 at 509.917 kb on - strand, within RR42_RS02275 at 510.090 kb on + strand, within RR42_RS02275 at 510.090 kb on + strand, within RR42_RS02275 at 510.090 kb on + strand, within RR42_RS02275 at 510.090 kb on + strand, within RR42_RS02275 at 510.090 kb on + strand, within RR42_RS02275 at 510.090 kb on + strand, within RR42_RS02275 at 510.091 kb on - strand, within RR42_RS02275 at 510.091 kb on - strand, within RR42_RS02275 at 510.091 kb on - strand, within RR42_RS02275 at 510.091 kb on - strand, within RR42_RS02275 at 510.091 kb on - strand, within RR42_RS02275 at 510.091 kb on - strand, within RR42_RS02275 at 510.223 kb on - strand at 510.223 kb on - strand at 510.360 kb on + strand at 510.535 kb on - strand, within RR42_RS02280 at 510.672 kb on + strand, within RR42_RS02280 at 511.035 kb on + strand, within RR42_RS02280 at 511.035 kb on + strand, within RR42_RS02280 at 511.035 kb on + strand, within RR42_RS02280 at 511.036 kb on - strand, within RR42_RS02280
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 23C remove 508,126 + -0.3 508,126 + -1.0 508,127 - -0.7 508,127 - -0.6 508,871 - RR42_RS02270 0.64 -0.6 509,033 + +0.1 509,075 + -1.2 509,076 - -0.5 509,305 - RR42_RS02275 0.18 +0.0 509,305 - RR42_RS02275 0.18 -0.0 509,606 + RR42_RS02275 0.43 -0.9 509,606 + RR42_RS02275 0.43 -0.9 509,607 - RR42_RS02275 0.43 +0.4 509,730 + RR42_RS02275 0.53 -0.6 509,731 - RR42_RS02275 0.53 +1.1 509,731 - RR42_RS02275 0.53 +0.2 509,742 + RR42_RS02275 0.54 -0.7 509,743 - RR42_RS02275 0.54 -0.2 509,743 - RR42_RS02275 0.54 -0.6 509,917 - RR42_RS02275 0.69 +0.1 509,917 - RR42_RS02275 0.69 -0.7 510,090 + RR42_RS02275 0.83 -0.2 510,090 + RR42_RS02275 0.83 -0.7 510,090 + RR42_RS02275 0.83 +0.1 510,090 + RR42_RS02275 0.83 -0.4 510,090 + RR42_RS02275 0.83 +0.1 510,090 + RR42_RS02275 0.83 +0.4 510,091 - RR42_RS02275 0.84 -0.1 510,091 - RR42_RS02275 0.84 -0.3 510,091 - RR42_RS02275 0.84 -1.2 510,091 - RR42_RS02275 0.84 +0.9 510,091 - RR42_RS02275 0.84 -1.2 510,091 - RR42_RS02275 0.84 +0.2 510,223 - -0.1 510,223 - -1.1 510,360 + -0.7 510,535 - RR42_RS02280 0.12 -0.0 510,672 + RR42_RS02280 0.22 -0.7 511,035 + RR42_RS02280 0.47 +0.2 511,035 + RR42_RS02280 0.47 -0.3 511,035 + RR42_RS02280 0.47 -0.7 511,036 - RR42_RS02280 0.47 +0.3
Or see this region's nucleotide sequence