Experiment: R2A 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00590 and RR42_RS00595 overlap by 4 nucleotides RR42_RS00595 and RR42_RS00600 overlap by 4 nucleotides RR42_RS00600 and RR42_RS00605 are separated by 106 nucleotides
RR42_RS00590: RR42_RS00590 - glutamyl-tRNA amidotransferase, at 155,908 to 157,413
_RS00590
RR42_RS00595: RR42_RS00595 - lipoprotein, at 157,410 to 157,877
_RS00595
RR42_RS00600: RR42_RS00600 - DeoR family transcriptional regulator, at 157,874 to 158,845
_RS00600
RR42_RS00605: RR42_RS00605 - glutamyl-tRNA amidotransferase, at 158,952 to 160,412
_RS00605
Position (kb) 157
158
159 Strain fitness (log2 ratio) -2
-1
0
1 at 157.703 kb on + strand, within RR42_RS00595 at 157.703 kb on + strand, within RR42_RS00595 at 157.815 kb on + strand, within RR42_RS00595 at 157.815 kb on + strand, within RR42_RS00595 at 157.815 kb on + strand, within RR42_RS00595 at 158.678 kb on + strand, within RR42_RS00600 at 158.855 kb on + strand at 158.861 kb on + strand at 158.861 kb on + strand at 158.861 kb on + strand at 158.865 kb on + strand at 158.865 kb on + strand at 158.865 kb on + strand at 158.905 kb on + strand at 158.905 kb on + strand at 158.905 kb on + strand at 158.916 kb on + strand at 158.916 kb on + strand at 158.916 kb on + strand at 158.926 kb on + strand at 158.926 kb on + strand at 158.926 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 23C remove 157,703 + RR42_RS00595 0.63 -0.4 157,703 + RR42_RS00595 0.63 -0.8 157,815 + RR42_RS00595 0.87 -0.3 157,815 + RR42_RS00595 0.87 -0.3 157,815 + RR42_RS00595 0.87 -0.5 158,678 + RR42_RS00600 0.83 -0.3 158,855 + +0.7 158,861 + -0.2 158,861 + +0.1 158,861 + -2.4 158,865 + -0.7 158,865 + +0.3 158,865 + +0.1 158,905 + -0.2 158,905 + -0.4 158,905 + +0.0 158,916 + +0.2 158,916 + +0.4 158,916 + +0.6 158,926 + -1.0 158,926 + +0.4 158,926 + -0.6
Or see this region's nucleotide sequence