Experiment: formate McAA folic dropout
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03870 and MMJJ_RS03875 are separated by 12 nucleotides MMJJ_RS03875 and MMJJ_RS03880 are separated by 75 nucleotides
MMJJ_RS03870: MMJJ_RS03870 - beta-ribofuranosylaminobenzene 5'-phosphate synthase, at 720,721 to 721,698
_RS03870
MMJJ_RS03875: MMJJ_RS03875 - CBS domain-containing protein, at 721,711 to 722,172
_RS03875
MMJJ_RS03880: MMJJ_RS03880 - TraB/GumN family protein, at 722,248 to 723,390
_RS03880
Position (kb) 721
722
723 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 720.748 kb on + strand at 720.902 kb on + strand, within MMJJ_RS03870 at 721.441 kb on - strand, within MMJJ_RS03870 at 721.668 kb on - strand at 721.774 kb on - strand, within MMJJ_RS03875 at 721.807 kb on - strand, within MMJJ_RS03875 at 721.843 kb on - strand, within MMJJ_RS03875 at 721.843 kb on - strand, within MMJJ_RS03875 at 721.888 kb on - strand, within MMJJ_RS03875 at 721.983 kb on - strand, within MMJJ_RS03875 at 721.984 kb on + strand, within MMJJ_RS03875 at 721.989 kb on - strand, within MMJJ_RS03875 at 721.989 kb on - strand, within MMJJ_RS03875 at 722.187 kb on + strand at 722.190 kb on - strand at 722.190 kb on - strand at 722.200 kb on - strand at 722.200 kb on - strand at 722.200 kb on - strand at 722.200 kb on - strand at 722.201 kb on + strand at 722.201 kb on + strand at 722.201 kb on + strand at 722.202 kb on - strand at 722.202 kb on - strand at 722.202 kb on - strand at 722.202 kb on - strand at 722.202 kb on - strand at 722.202 kb on - strand at 722.202 kb on - strand at 722.202 kb on - strand at 722.202 kb on - strand at 722.202 kb on - strand at 722.203 kb on + strand at 722.203 kb on + strand at 722.203 kb on + strand at 722.203 kb on + strand at 722.204 kb on - strand at 722.204 kb on - strand at 722.204 kb on - strand at 722.204 kb on - strand at 722.204 kb on - strand at 722.204 kb on - strand at 722.205 kb on + strand at 722.205 kb on + strand at 722.205 kb on + strand at 722.205 kb on + strand at 722.205 kb on + strand at 722.205 kb on + strand at 722.205 kb on + strand at 722.205 kb on + strand at 722.206 kb on - strand at 722.206 kb on - strand at 722.206 kb on - strand at 722.206 kb on - strand at 722.206 kb on - strand at 722.206 kb on - strand at 722.206 kb on - strand at 722.207 kb on + strand at 722.207 kb on + strand at 722.207 kb on + strand at 722.207 kb on + strand at 722.218 kb on - strand at 722.223 kb on + strand at 722.223 kb on + strand at 722.223 kb on + strand at 722.226 kb on - strand at 722.226 kb on - strand at 722.227 kb on + strand at 722.227 kb on + strand at 722.229 kb on - strand at 722.229 kb on - strand at 722.229 kb on - strand at 722.229 kb on - strand at 722.229 kb on - strand at 722.229 kb on - strand at 722.229 kb on - strand at 722.230 kb on + strand at 722.230 kb on + strand at 722.233 kb on - strand at 722.233 kb on - strand at 722.233 kb on - strand at 722.233 kb on - strand at 722.233 kb on - strand at 722.233 kb on - strand at 722.233 kb on - strand at 722.234 kb on + strand at 722.234 kb on + strand at 722.234 kb on + strand at 722.235 kb on - strand at 722.236 kb on + strand at 722.236 kb on + strand at 722.236 kb on + strand at 722.236 kb on + strand at 722.236 kb on + strand at 722.236 kb on + strand at 722.236 kb on + strand at 722.244 kb on - strand at 722.244 kb on - strand at 722.251 kb on - strand at 722.251 kb on - strand at 722.251 kb on - strand at 722.251 kb on - strand at 722.251 kb on - strand at 722.251 kb on - strand at 722.251 kb on - strand at 722.252 kb on + strand at 722.252 kb on + strand at 722.252 kb on + strand at 722.252 kb on + strand at 722.252 kb on + strand at 722.252 kb on + strand at 722.253 kb on - strand at 722.253 kb on - strand at 722.253 kb on - strand at 722.253 kb on - strand at 722.253 kb on - strand at 722.253 kb on - strand at 722.253 kb on - strand at 722.254 kb on + strand at 722.254 kb on + strand at 722.254 kb on + strand at 722.254 kb on + strand at 722.255 kb on - strand at 722.255 kb on - strand at 722.255 kb on - strand at 722.256 kb on + strand at 722.256 kb on + strand at 722.256 kb on + strand at 722.312 kb on - strand at 722.313 kb on + strand at 722.313 kb on + strand at 722.322 kb on - strand at 722.372 kb on - strand, within MMJJ_RS03880 at 722.384 kb on - strand, within MMJJ_RS03880 at 722.385 kb on + strand, within MMJJ_RS03880 at 722.466 kb on + strand, within MMJJ_RS03880 at 722.466 kb on + strand, within MMJJ_RS03880 at 722.473 kb on - strand, within MMJJ_RS03880 at 722.474 kb on + strand, within MMJJ_RS03880 at 722.474 kb on + strand, within MMJJ_RS03880 at 722.477 kb on - strand, within MMJJ_RS03880 at 722.478 kb on + strand, within MMJJ_RS03880 at 722.478 kb on + strand, within MMJJ_RS03880 at 722.493 kb on + strand, within MMJJ_RS03880 at 722.573 kb on - strand, within MMJJ_RS03880 at 722.574 kb on + strand, within MMJJ_RS03880 at 722.604 kb on - strand, within MMJJ_RS03880 at 722.614 kb on + strand, within MMJJ_RS03880 at 722.619 kb on - strand, within MMJJ_RS03880 at 722.619 kb on - strand, within MMJJ_RS03880 at 722.624 kb on - strand, within MMJJ_RS03880 at 722.638 kb on + strand, within MMJJ_RS03880 at 722.652 kb on - strand, within MMJJ_RS03880 at 722.705 kb on - strand, within MMJJ_RS03880 at 722.751 kb on + strand, within MMJJ_RS03880 at 722.763 kb on + strand, within MMJJ_RS03880 at 722.785 kb on - strand, within MMJJ_RS03880 at 722.812 kb on + strand, within MMJJ_RS03880 at 722.812 kb on + strand, within MMJJ_RS03880 at 722.812 kb on + strand, within MMJJ_RS03880 at 722.815 kb on - strand, within MMJJ_RS03880 at 722.815 kb on - strand, within MMJJ_RS03880 at 722.815 kb on - strand, within MMJJ_RS03880 at 722.815 kb on - strand, within MMJJ_RS03880 at 722.815 kb on - strand, within MMJJ_RS03880 at 722.815 kb on - strand, within MMJJ_RS03880 at 722.815 kb on - strand, within MMJJ_RS03880 at 722.815 kb on - strand, within MMJJ_RS03880 at 722.816 kb on + strand, within MMJJ_RS03880 at 722.816 kb on + strand, within MMJJ_RS03880 at 722.816 kb on + strand, within MMJJ_RS03880 at 722.816 kb on + strand, within MMJJ_RS03880 at 722.816 kb on + strand, within MMJJ_RS03880 at 722.816 kb on + strand, within MMJJ_RS03880 at 722.816 kb on + strand, within MMJJ_RS03880 at 722.816 kb on + strand, within MMJJ_RS03880 at 722.816 kb on + strand, within MMJJ_RS03880 at 722.816 kb on + strand, within MMJJ_RS03880 at 722.816 kb on + strand, within MMJJ_RS03880 at 722.816 kb on + strand, within MMJJ_RS03880 at 722.816 kb on + strand, within MMJJ_RS03880 at 722.816 kb on + strand, within MMJJ_RS03880 at 722.817 kb on - strand, within MMJJ_RS03880 at 722.818 kb on + strand, within MMJJ_RS03880 at 722.818 kb on + strand, within MMJJ_RS03880 at 722.870 kb on - strand, within MMJJ_RS03880 at 722.870 kb on - strand, within MMJJ_RS03880 at 722.871 kb on + strand, within MMJJ_RS03880 at 722.871 kb on + strand, within MMJJ_RS03880 at 722.871 kb on + strand, within MMJJ_RS03880 at 722.977 kb on + strand, within MMJJ_RS03880 at 722.986 kb on + strand, within MMJJ_RS03880 at 723.006 kb on + strand, within MMJJ_RS03880 at 723.006 kb on + strand, within MMJJ_RS03880 at 723.011 kb on - strand, within MMJJ_RS03880 at 723.017 kb on - strand, within MMJJ_RS03880 at 723.018 kb on + strand, within MMJJ_RS03880 at 723.022 kb on - strand, within MMJJ_RS03880 at 723.060 kb on + strand, within MMJJ_RS03880 at 723.069 kb on - strand, within MMJJ_RS03880 at 723.088 kb on + strand, within MMJJ_RS03880 at 723.089 kb on - strand, within MMJJ_RS03880
Per-strain Table
Position Strand Gene LocusTag Fraction formate McAA folic dropout remove 720,748 + -1.5 720,902 + MMJJ_RS03870 0.19 -1.3 721,441 - MMJJ_RS03870 0.74 -3.3 721,668 - -2.0 721,774 - MMJJ_RS03875 0.14 -2.8 721,807 - MMJJ_RS03875 0.21 -4.4 721,843 - MMJJ_RS03875 0.29 -0.5 721,843 - MMJJ_RS03875 0.29 -3.7 721,888 - MMJJ_RS03875 0.38 -2.8 721,983 - MMJJ_RS03875 0.59 -1.8 721,984 + MMJJ_RS03875 0.59 -1.8 721,989 - MMJJ_RS03875 0.60 -4.4 721,989 - MMJJ_RS03875 0.60 -4.6 722,187 + -2.3 722,190 - -1.2 722,190 - -2.7 722,200 - -4.8 722,200 - -1.2 722,200 - -3.2 722,200 - -0.5 722,201 + -1.1 722,201 + -0.3 722,201 + -2.3 722,202 - -4.1 722,202 - -1.4 722,202 - -2.6 722,202 - -3.2 722,202 - -2.4 722,202 - -2.2 722,202 - -2.1 722,202 - -1.0 722,202 - -3.0 722,202 - -4.1 722,203 + -1.8 722,203 + -2.1 722,203 + -2.3 722,203 + -2.3 722,204 - -2.3 722,204 - -2.4 722,204 - -1.8 722,204 - -2.6 722,204 - -2.6 722,204 - -1.1 722,205 + -3.3 722,205 + -3.7 722,205 + -2.3 722,205 + -1.9 722,205 + -1.7 722,205 + -2.7 722,205 + -2.7 722,205 + -1.9 722,206 - -1.7 722,206 - -2.5 722,206 - -2.8 722,206 - -0.9 722,206 - -1.6 722,206 - -1.8 722,206 - -2.5 722,207 + -0.1 722,207 + -0.3 722,207 + -1.2 722,207 + -1.3 722,218 - -3.2 722,223 + -1.2 722,223 + -1.5 722,223 + -0.1 722,226 - +0.3 722,226 - +0.9 722,227 + +0.4 722,227 + +0.0 722,229 - -1.7 722,229 - -1.0 722,229 - +0.1 722,229 - -0.1 722,229 - -0.7 722,229 - -0.6 722,229 - -0.0 722,230 + -0.1 722,230 + -3.2 722,233 - -1.8 722,233 - +0.3 722,233 - -0.3 722,233 - -0.9 722,233 - -1.6 722,233 - -2.3 722,233 - -0.9 722,234 + -1.6 722,234 + -2.3 722,234 + -0.9 722,235 - -1.5 722,236 + -1.1 722,236 + -1.3 722,236 + -1.6 722,236 + -0.4 722,236 + -1.0 722,236 + -0.3 722,236 + +0.2 722,244 - -1.0 722,244 - -1.2 722,251 - -1.1 722,251 - -0.6 722,251 - -2.5 722,251 - -2.3 722,251 - -0.6 722,251 - -0.9 722,251 - -2.0 722,252 + -2.1 722,252 + -1.8 722,252 + -1.8 722,252 + -0.7 722,252 + -0.6 722,252 + -1.3 722,253 - -2.3 722,253 - -0.9 722,253 - +0.2 722,253 - -1.5 722,253 - -0.4 722,253 - -1.9 722,253 - -0.4 722,254 + -1.9 722,254 + -2.3 722,254 + -1.3 722,254 + -2.7 722,255 - -0.7 722,255 - +0.0 722,255 - -1.1 722,256 + -1.5 722,256 + +0.3 722,256 + -0.9 722,312 - -2.3 722,313 + -1.5 722,313 + -1.0 722,322 - -1.2 722,372 - MMJJ_RS03880 0.11 -1.8 722,384 - MMJJ_RS03880 0.12 -1.5 722,385 + MMJJ_RS03880 0.12 -2.3 722,466 + MMJJ_RS03880 0.19 -0.2 722,466 + MMJJ_RS03880 0.19 -0.6 722,473 - MMJJ_RS03880 0.20 +0.9 722,474 + MMJJ_RS03880 0.20 -0.8 722,474 + MMJJ_RS03880 0.20 -0.2 722,477 - MMJJ_RS03880 0.20 -1.2 722,478 + MMJJ_RS03880 0.20 -0.7 722,478 + MMJJ_RS03880 0.20 -3.4 722,493 + MMJJ_RS03880 0.21 -0.4 722,573 - MMJJ_RS03880 0.28 -2.3 722,574 + MMJJ_RS03880 0.29 -0.3 722,604 - MMJJ_RS03880 0.31 +0.6 722,614 + MMJJ_RS03880 0.32 -2.3 722,619 - MMJJ_RS03880 0.32 -0.8 722,619 - MMJJ_RS03880 0.32 -0.9 722,624 - MMJJ_RS03880 0.33 +0.2 722,638 + MMJJ_RS03880 0.34 -2.4 722,652 - MMJJ_RS03880 0.35 -1.3 722,705 - MMJJ_RS03880 0.40 -0.3 722,751 + MMJJ_RS03880 0.44 -0.3 722,763 + MMJJ_RS03880 0.45 -3.3 722,785 - MMJJ_RS03880 0.47 -2.7 722,812 + MMJJ_RS03880 0.49 -1.2 722,812 + MMJJ_RS03880 0.49 -1.0 722,812 + MMJJ_RS03880 0.49 +0.1 722,815 - MMJJ_RS03880 0.50 -0.4 722,815 - MMJJ_RS03880 0.50 -2.2 722,815 - MMJJ_RS03880 0.50 -0.4 722,815 - MMJJ_RS03880 0.50 -1.2 722,815 - MMJJ_RS03880 0.50 -1.7 722,815 - MMJJ_RS03880 0.50 -1.8 722,815 - MMJJ_RS03880 0.50 -1.4 722,815 - MMJJ_RS03880 0.50 -2.0 722,816 + MMJJ_RS03880 0.50 -0.5 722,816 + MMJJ_RS03880 0.50 +0.4 722,816 + MMJJ_RS03880 0.50 +1.4 722,816 + MMJJ_RS03880 0.50 -1.2 722,816 + MMJJ_RS03880 0.50 -1.3 722,816 + MMJJ_RS03880 0.50 -1.5 722,816 + MMJJ_RS03880 0.50 -1.8 722,816 + MMJJ_RS03880 0.50 -1.0 722,816 + MMJJ_RS03880 0.50 -1.3 722,816 + MMJJ_RS03880 0.50 -1.2 722,816 + MMJJ_RS03880 0.50 -0.9 722,816 + MMJJ_RS03880 0.50 -0.9 722,816 + MMJJ_RS03880 0.50 -0.5 722,816 + MMJJ_RS03880 0.50 -1.7 722,817 - MMJJ_RS03880 0.50 -0.7 722,818 + MMJJ_RS03880 0.50 -0.5 722,818 + MMJJ_RS03880 0.50 -0.3 722,870 - MMJJ_RS03880 0.54 -1.5 722,870 - MMJJ_RS03880 0.54 -0.3 722,871 + MMJJ_RS03880 0.55 -0.7 722,871 + MMJJ_RS03880 0.55 -1.4 722,871 + MMJJ_RS03880 0.55 +0.5 722,977 + MMJJ_RS03880 0.64 -1.1 722,986 + MMJJ_RS03880 0.65 -1.1 723,006 + MMJJ_RS03880 0.66 -0.8 723,006 + MMJJ_RS03880 0.66 -1.4 723,011 - MMJJ_RS03880 0.67 -0.5 723,017 - MMJJ_RS03880 0.67 -0.4 723,018 + MMJJ_RS03880 0.67 -0.5 723,022 - MMJJ_RS03880 0.68 -0.3 723,060 + MMJJ_RS03880 0.71 +0.2 723,069 - MMJJ_RS03880 0.72 +1.3 723,088 + MMJJ_RS03880 0.73 -2.5 723,089 - MMJJ_RS03880 0.74 -0.1
Or see this region's nucleotide sequence