Experiment: formate McAA folic dropout
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00270 and MMJJ_RS00275 are separated by 53 nucleotides MMJJ_RS00275 and MMJJ_RS00280 are separated by 16 nucleotides MMJJ_RS00280 and MMJJ_RS00285 are separated by 5 nucleotides MMJJ_RS00285 and MMJJ_RS00290 are separated by 275 nucleotides
MMJJ_RS00270: MMJJ_RS00270 - adenosylcobinamide-GDP ribazoletransferase, at 52,504 to 53,277
_RS00270
MMJJ_RS00275: MMJJ_RS00275 - coenzyme F420-0:L-glutamate ligase, at 53,331 to 54,077
_RS00275
MMJJ_RS00280: MMJJ_RS00280 - shikimate dehydrogenase, at 54,094 to 54,930
_RS00280
MMJJ_RS00285: MMJJ_RS00285 - UPF0254 family protein, at 54,936 to 55,433
_RS00285
MMJJ_RS00290: MMJJ_RS00290 - CheF family chemotaxis protein, at 55,709 to 56,755
_RS00290
Position (kb) 54
55 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 53.257 kb on - strand at 53.269 kb on + strand at 53.279 kb on - strand at 53.300 kb on + strand at 53.305 kb on - strand at 53.309 kb on - strand at 53.561 kb on - strand, within MMJJ_RS00275 at 53.667 kb on + strand, within MMJJ_RS00275 at 53.838 kb on - strand, within MMJJ_RS00275 at 53.839 kb on + strand, within MMJJ_RS00275 at 53.981 kb on + strand, within MMJJ_RS00275 at 54.006 kb on + strand at 54.108 kb on - strand at 54.130 kb on - strand at 54.131 kb on + strand at 54.298 kb on + strand, within MMJJ_RS00280 at 54.495 kb on - strand, within MMJJ_RS00280 at 54.862 kb on - strand at 54.943 kb on + strand at 54.950 kb on + strand at 54.977 kb on - strand at 54.977 kb on - strand at 54.977 kb on - strand at 54.982 kb on - strand at 54.993 kb on - strand, within MMJJ_RS00285 at 55.018 kb on + strand, within MMJJ_RS00285 at 55.033 kb on + strand, within MMJJ_RS00285 at 55.035 kb on - strand, within MMJJ_RS00285 at 55.035 kb on - strand, within MMJJ_RS00285 at 55.036 kb on + strand, within MMJJ_RS00285 at 55.036 kb on + strand, within MMJJ_RS00285 at 55.067 kb on + strand, within MMJJ_RS00285 at 55.076 kb on + strand, within MMJJ_RS00285 at 55.084 kb on + strand, within MMJJ_RS00285 at 55.086 kb on - strand, within MMJJ_RS00285 at 55.179 kb on - strand, within MMJJ_RS00285 at 55.182 kb on - strand, within MMJJ_RS00285 at 55.183 kb on + strand, within MMJJ_RS00285 at 55.185 kb on - strand, within MMJJ_RS00285 at 55.185 kb on - strand, within MMJJ_RS00285 at 55.185 kb on - strand, within MMJJ_RS00285 at 55.186 kb on + strand, within MMJJ_RS00285 at 55.186 kb on + strand, within MMJJ_RS00285 at 55.202 kb on - strand, within MMJJ_RS00285 at 55.202 kb on - strand, within MMJJ_RS00285 at 55.202 kb on - strand, within MMJJ_RS00285 at 55.205 kb on + strand, within MMJJ_RS00285 at 55.303 kb on + strand, within MMJJ_RS00285 at 55.303 kb on + strand, within MMJJ_RS00285 at 55.306 kb on - strand, within MMJJ_RS00285 at 55.306 kb on - strand, within MMJJ_RS00285 at 55.307 kb on + strand, within MMJJ_RS00285 at 55.307 kb on + strand, within MMJJ_RS00285 at 55.307 kb on + strand, within MMJJ_RS00285 at 55.307 kb on + strand, within MMJJ_RS00285 at 55.307 kb on + strand, within MMJJ_RS00285 at 55.307 kb on + strand, within MMJJ_RS00285 at 55.308 kb on - strand, within MMJJ_RS00285 at 55.308 kb on - strand, within MMJJ_RS00285 at 55.308 kb on - strand, within MMJJ_RS00285 at 55.308 kb on - strand, within MMJJ_RS00285 at 55.308 kb on - strand, within MMJJ_RS00285 at 55.308 kb on - strand, within MMJJ_RS00285 at 55.308 kb on - strand, within MMJJ_RS00285 at 55.308 kb on - strand, within MMJJ_RS00285 at 55.308 kb on - strand, within MMJJ_RS00285 at 55.308 kb on - strand, within MMJJ_RS00285 at 55.309 kb on + strand, within MMJJ_RS00285 at 55.309 kb on + strand, within MMJJ_RS00285 at 55.309 kb on + strand, within MMJJ_RS00285 at 55.309 kb on + strand, within MMJJ_RS00285 at 55.309 kb on + strand, within MMJJ_RS00285 at 55.309 kb on + strand, within MMJJ_RS00285 at 55.309 kb on + strand, within MMJJ_RS00285 at 55.309 kb on + strand, within MMJJ_RS00285 at 55.309 kb on + strand at 55.309 kb on + strand, within MMJJ_RS00285 at 55.330 kb on - strand, within MMJJ_RS00285 at 55.330 kb on - strand, within MMJJ_RS00285 at 55.330 kb on - strand, within MMJJ_RS00285 at 55.355 kb on - strand, within MMJJ_RS00285 at 55.356 kb on + strand, within MMJJ_RS00285 at 55.377 kb on - strand, within MMJJ_RS00285 at 55.383 kb on + strand, within MMJJ_RS00285 at 55.383 kb on + strand, within MMJJ_RS00285 at 55.434 kb on + strand at 55.436 kb on - strand at 55.446 kb on + strand at 55.466 kb on + strand at 55.482 kb on - strand at 55.485 kb on - strand at 55.487 kb on - strand at 55.487 kb on - strand at 55.487 kb on - strand at 55.487 kb on - strand at 55.488 kb on + strand at 55.488 kb on + strand at 55.488 kb on + strand at 55.491 kb on + strand at 55.496 kb on + strand at 55.506 kb on + strand at 55.509 kb on - strand at 55.510 kb on + strand at 55.519 kb on - strand at 55.519 kb on - strand at 55.523 kb on + strand at 55.527 kb on - strand at 55.527 kb on - strand at 55.527 kb on - strand at 55.527 kb on - strand at 55.528 kb on + strand at 55.533 kb on - strand at 55.538 kb on - strand at 55.538 kb on - strand at 55.539 kb on + strand at 55.547 kb on - strand at 55.548 kb on + strand at 55.554 kb on + strand at 55.557 kb on - strand at 55.568 kb on - strand at 55.568 kb on - strand at 55.569 kb on + strand at 55.569 kb on + strand at 55.596 kb on - strand at 55.597 kb on + strand at 55.599 kb on + strand at 55.600 kb on - strand at 55.604 kb on - strand at 55.604 kb on - strand at 55.605 kb on + strand at 55.606 kb on - strand at 55.606 kb on - strand at 55.634 kb on - strand at 55.635 kb on + strand at 55.635 kb on + strand at 55.644 kb on - strand at 55.645 kb on + strand at 55.646 kb on - strand at 55.646 kb on - strand at 55.646 kb on - strand at 55.646 kb on - strand at 55.647 kb on + strand at 55.647 kb on + strand at 55.682 kb on + strand at 55.720 kb on - strand at 55.766 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction formate McAA folic dropout remove 53,257 - -1.0 53,269 + -1.1 53,279 - +0.1 53,300 + +0.6 53,305 - -1.7 53,309 - +0.6 53,561 - MMJJ_RS00275 0.31 -3.1 53,667 + MMJJ_RS00275 0.45 -4.0 53,838 - MMJJ_RS00275 0.68 -3.2 53,839 + MMJJ_RS00275 0.68 -2.0 53,981 + MMJJ_RS00275 0.87 -3.7 54,006 + -1.7 54,108 - -0.3 54,130 - -2.3 54,131 + -1.2 54,298 + MMJJ_RS00280 0.24 -2.9 54,495 - MMJJ_RS00280 0.48 -2.2 54,862 - -1.7 54,943 + -1.9 54,950 + +0.6 54,977 - +0.5 54,977 - -0.8 54,977 - -0.1 54,982 - -0.6 54,993 - MMJJ_RS00285 0.11 -0.7 55,018 + MMJJ_RS00285 0.16 -1.1 55,033 + MMJJ_RS00285 0.19 -1.7 55,035 - MMJJ_RS00285 0.20 -0.6 55,035 - MMJJ_RS00285 0.20 -1.5 55,036 + MMJJ_RS00285 0.20 -0.1 55,036 + MMJJ_RS00285 0.20 -0.8 55,067 + MMJJ_RS00285 0.26 -0.5 55,076 + MMJJ_RS00285 0.28 -0.9 55,084 + MMJJ_RS00285 0.30 -0.7 55,086 - MMJJ_RS00285 0.30 -1.3 55,179 - MMJJ_RS00285 0.49 -0.2 55,182 - MMJJ_RS00285 0.49 -0.2 55,183 + MMJJ_RS00285 0.50 -1.1 55,185 - MMJJ_RS00285 0.50 -0.8 55,185 - MMJJ_RS00285 0.50 -0.4 55,185 - MMJJ_RS00285 0.50 -0.4 55,186 + MMJJ_RS00285 0.50 -1.1 55,186 + MMJJ_RS00285 0.50 +0.3 55,202 - MMJJ_RS00285 0.53 +0.1 55,202 - MMJJ_RS00285 0.53 +0.1 55,202 - MMJJ_RS00285 0.53 -1.8 55,205 + MMJJ_RS00285 0.54 -1.8 55,303 + MMJJ_RS00285 0.74 -0.8 55,303 + MMJJ_RS00285 0.74 -0.1 55,306 - MMJJ_RS00285 0.74 -0.3 55,306 - MMJJ_RS00285 0.74 -3.0 55,307 + MMJJ_RS00285 0.74 -0.7 55,307 + MMJJ_RS00285 0.74 -0.9 55,307 + MMJJ_RS00285 0.74 +0.2 55,307 + MMJJ_RS00285 0.74 -1.8 55,307 + MMJJ_RS00285 0.74 -1.4 55,307 + MMJJ_RS00285 0.74 +0.5 55,308 - MMJJ_RS00285 0.75 -2.1 55,308 - MMJJ_RS00285 0.75 -1.4 55,308 - MMJJ_RS00285 0.75 -1.5 55,308 - MMJJ_RS00285 0.75 -0.1 55,308 - MMJJ_RS00285 0.75 -1.2 55,308 - MMJJ_RS00285 0.75 -0.8 55,308 - MMJJ_RS00285 0.75 -0.0 55,308 - MMJJ_RS00285 0.75 -1.2 55,308 - MMJJ_RS00285 0.75 -1.2 55,308 - MMJJ_RS00285 0.75 -1.1 55,309 + MMJJ_RS00285 0.75 -0.4 55,309 + MMJJ_RS00285 0.75 -1.6 55,309 + MMJJ_RS00285 0.75 -2.0 55,309 + MMJJ_RS00285 0.75 -0.1 55,309 + MMJJ_RS00285 0.75 -2.6 55,309 + MMJJ_RS00285 0.75 -0.7 55,309 + MMJJ_RS00285 0.75 -0.3 55,309 + MMJJ_RS00285 0.75 +0.1 55,309 + -1.7 55,309 + MMJJ_RS00285 0.75 -0.9 55,330 - MMJJ_RS00285 0.79 -0.7 55,330 - MMJJ_RS00285 0.79 -0.1 55,330 - MMJJ_RS00285 0.79 -0.1 55,355 - MMJJ_RS00285 0.84 -0.6 55,356 + MMJJ_RS00285 0.84 +0.4 55,377 - MMJJ_RS00285 0.89 -2.9 55,383 + MMJJ_RS00285 0.90 -0.2 55,383 + MMJJ_RS00285 0.90 +0.5 55,434 + +0.5 55,436 - +1.1 55,446 + -1.1 55,466 + -0.9 55,482 - +0.2 55,485 - -1.2 55,487 - -0.9 55,487 - +0.4 55,487 - -0.2 55,487 - -0.5 55,488 + +0.5 55,488 + +0.6 55,488 + -0.7 55,491 + -0.4 55,496 + +1.1 55,506 + -0.8 55,509 - +0.8 55,510 + -0.3 55,519 - +0.6 55,519 - -0.5 55,523 + +1.0 55,527 - +0.0 55,527 - +0.1 55,527 - -0.1 55,527 - +0.2 55,528 + -1.3 55,533 - -0.5 55,538 - +0.4 55,538 - +0.3 55,539 + -0.3 55,547 - -0.3 55,548 + -0.8 55,554 + -0.4 55,557 - -0.8 55,568 - -0.4 55,568 - -2.9 55,569 + -0.1 55,569 + -0.4 55,596 - +0.6 55,597 + -0.0 55,599 + +0.7 55,600 - +0.1 55,604 - -0.0 55,604 - -0.1 55,605 + +0.5 55,606 - -0.4 55,606 - -0.1 55,634 - +0.3 55,635 + +0.3 55,635 + +0.1 55,644 - +0.0 55,645 + -0.1 55,646 - +0.3 55,646 - +0.3 55,646 - -0.2 55,646 - -0.7 55,647 + +0.6 55,647 + +0.1 55,682 + -1.0 55,720 - -0.4 55,766 - +0.6
Or see this region's nucleotide sequence