Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS20505

Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
4,697,554	-				+0.5
4,697,554	-				-0.3
4,697,571	+				-0.9
4,697,576	-				+0.8
4,697,576	-				-0.8
4,697,617	+				-0.7
4,697,621	+				+0.4
4,697,629	-				+0.0
4,697,630	-				-0.2
4,697,632	+				+2.7
4,697,632	+				-1.1
4,697,632	+				+0.1
4,697,640	-				+0.0
4,697,640	-				+0.9
4,697,640	-				+0.4
4,697,640	-				+0.2
4,697,640	-				+0.2
4,697,712	+				-1.2
4,697,712	+				-2.0
4,697,712	+				-1.3
4,697,712	+				+1.2
4,697,712	+				-0.1
4,697,712	+				+0.5
4,697,712	+				+0.2
4,697,712	+				+0.1
4,697,712	+				+0.4
4,697,712	+				+0.1
4,697,720	-				+0.7
4,697,720	-				-2.1
4,697,720	-				+0.8
4,697,720	-				+0.0
4,697,720	-				-1.1
4,697,720	-				+0.6
4,697,720	-				+1.7
4,697,720	-				-0.0
4,697,720	-				-0.6
4,697,720	-				+1.4
4,697,720	-				-0.5
4,697,720	-				+0.2
4,697,729	+				-0.4
4,697,755	+				-0.5
4,697,758	-				+0.2
4,697,765	-				+0.1
4,697,765	-				+0.8
4,697,781	+				+2.6
4,697,788	-				+0.1
4,697,789	-				-0.9
4,697,789	-				-2.2
4,697,797	-				+0.1
4,697,836	+				+4.0
4,697,836	+				+1.2
4,697,836	+				-0.4
4,697,843	+				+1.3
4,697,844	-				+0.4
4,697,844	-				-0.5
4,697,844	-				+0.0
4,697,844	-				-0.4
4,697,844	-				-1.0
4,697,844	-				-0.4
4,697,851	-				+1.1
4,697,855	+				-0.1
4,697,859	+				-0.0
4,697,877	-				+0.0
4,697,893	+				-2.0
4,697,901	-				-0.5
4,697,901	-				+0.9
4,697,901	-				+1.7
4,697,933	-				-1.6
4,697,936	+				-0.3
4,697,970	-				+0.1
4,697,980	-				-0.6
4,697,989	+				+0.7
4,698,029	-				-0.5
4,698,039	-				-0.2
4,698,047	-				-1.3
4,698,063	+				+0.4
4,698,071	-				-1.2
4,698,111	-				+2.7
4,698,112	+				+2.7
4,698,119	-				+0.5
4,698,159	+		HSERO_RS20500	0.17	-0.0
4,698,161	-		HSERO_RS20500	0.18	+0.2
4,698,164	+		HSERO_RS20500	0.18	-0.2
4,698,164	+		HSERO_RS20500	0.18	-0.2
4,698,167	-		HSERO_RS20500	0.19	+1.1
4,698,183	+		HSERO_RS20500	0.23	-0.7
4,698,183	+		HSERO_RS20500	0.23	+0.5
4,698,185	-		HSERO_RS20500	0.23	-0.8
4,698,207	-		HSERO_RS20500	0.28	-0.4
4,698,239	-		HSERO_RS20500	0.35	+0.2
4,698,275	-		HSERO_RS20500	0.42	+0.1
4,698,305	+		HSERO_RS20500	0.49	-0.3
4,698,306	+		HSERO_RS20500	0.49	-0.6
4,698,339	+		HSERO_RS20500	0.56	+0.1
4,698,343	-		HSERO_RS20500	0.57	-0.0
4,698,347	-		HSERO_RS20500	0.58	-1.0
4,698,360	+		HSERO_RS20500	0.61	-0.1
4,698,382	-		HSERO_RS20500	0.66	+0.7
4,698,387	-		HSERO_RS20500	0.67	-1.4
4,698,400	+		HSERO_RS20500	0.69	-0.9
4,698,400	+		HSERO_RS20500	0.69	+0.8
4,698,415	+		HSERO_RS20500	0.73	-0.3
4,698,423	+		HSERO_RS20500	0.74	-0.9
4,698,429	+		HSERO_RS20500	0.76	+0.3
4,698,429	+		HSERO_RS20500	0.76	+1.3
4,698,429	+		HSERO_RS20500	0.76	-0.5
4,698,429	+		HSERO_RS20500	0.76	+0.6
4,698,429	+		HSERO_RS20500	0.76	-0.4
4,698,429	+		HSERO_RS20500	0.76	-0.9
4,698,429	+		HSERO_RS20500	0.76	-0.6
4,698,429	+		HSERO_RS20500	0.76	-0.3
4,698,429	+		HSERO_RS20500	0.76	+2.2
4,698,429	+		HSERO_RS20500	0.76	-0.3
4,698,434	+		HSERO_RS20500	0.77	+0.1
4,698,434	+		HSERO_RS20500	0.77	+0.3
4,698,437	-		HSERO_RS20500	0.77	-0.5
4,698,437	-		HSERO_RS20500	0.77	-1.1
4,698,437	-		HSERO_RS20500	0.77	-0.2
4,698,437	-		HSERO_RS20500	0.77	+0.0
4,698,437	-		HSERO_RS20500	0.77	-0.2
4,698,437	-		HSERO_RS20500	0.77	-1.9
4,698,437	-		HSERO_RS20500	0.77	+0.4
4,698,437	-		HSERO_RS20500	0.77	-0.4
4,698,437	-		HSERO_RS20500	0.77	+0.5
4,698,437	-		HSERO_RS20500	0.77	-0.4
4,698,437	-		HSERO_RS20500	0.77	+0.2
4,698,439	+		HSERO_RS20500	0.78	-0.4
4,698,439	+		HSERO_RS20500	0.78	+0.3
4,698,439	+		HSERO_RS20500	0.78	-0.9
4,698,442	-		HSERO_RS20500	0.79	+1.0
4,698,442	-		HSERO_RS20500	0.79	+0.1
4,698,442	-		HSERO_RS20500	0.79	+0.7
4,698,442	-		HSERO_RS20500	0.79	-0.9
4,698,442	-		HSERO_RS20500	0.79	-1.6
4,698,447	-		HSERO_RS20500	0.80	-0.2
4,698,447	-		HSERO_RS20500	0.80	-0.0
4,698,449	+		HSERO_RS20500	0.80	+2.9
4,698,459	+				+1.1
4,698,470	+		HSERO_RS20500	0.85	-0.3
4,698,498	+				-1.2
4,698,498	+				-0.6
4,698,506	-				+0.9
4,698,519	-				-0.5
4,698,535	+				+0.1
4,698,542	+				-1.6
4,698,594	+				-0.0
4,698,594	+				+0.5
4,698,594	+				-1.3
4,698,594	+				-0.4
4,698,594	+				-0.6
4,698,594	+				-0.7
4,698,594	+				+0.5
4,698,594	+				+0.9
4,698,594	+				+0.8
4,698,594	+				+0.3
4,698,594	+				-0.8
4,698,602	-				-1.4
4,698,602	-				-0.5
4,698,602	-				-0.4
4,698,602	-				+0.3
4,698,602	-				-0.9
4,698,602	-				-0.0
4,698,602	-				+0.0
4,698,602	-				+0.7
4,698,602	-				+2.1
4,698,602	-				+1.0
4,698,607	-				+0.8
4,698,607	-				-0.2
4,698,610	+				-0.4
4,698,619	-				-1.3
4,698,619	-				+0.8
4,698,690	-		HSERO_RS20505	0.11	-1.0
4,698,692	+		HSERO_RS20505	0.12	+0.6
4,698,692	+		HSERO_RS20505	0.12	-0.4
4,698,692	+		HSERO_RS20505	0.12	-0.8
4,698,694	+		HSERO_RS20505	0.12	-0.4
4,698,702	+		HSERO_RS20505	0.12	+0.1
4,698,702	+		HSERO_RS20505	0.12	+0.8
4,698,702	+		HSERO_RS20505	0.12	+0.3
4,698,702	+		HSERO_RS20505	0.12	+0.0
4,698,702	+		HSERO_RS20505	0.12	-0.3
4,698,710	-		HSERO_RS20505	0.13	+0.0
4,698,710	-		HSERO_RS20505	0.13	+0.3
4,698,710	-		HSERO_RS20505	0.13	-0.2
4,698,710	-		HSERO_RS20505	0.13	+0.6
4,698,710	-		HSERO_RS20505	0.13	-1.4
4,698,710	-		HSERO_RS20505	0.13	-0.7
4,698,710	-		HSERO_RS20505	0.13	+0.0
4,698,710	-		HSERO_RS20505	0.13	-1.1
4,698,716	+		HSERO_RS20505	0.14	-0.1
4,698,762	-		HSERO_RS20505	0.17	+0.3
4,698,764	+		HSERO_RS20505	0.17	-0.0
4,698,764	+		HSERO_RS20505	0.17	+0.9
4,698,764	+		HSERO_RS20505	0.17	-1.0
4,698,764	+				+1.8
4,698,764	+		HSERO_RS20505	0.17	-0.4
4,698,764	+		HSERO_RS20505	0.17	-0.3
4,698,764	+		HSERO_RS20505	0.17	-0.2
4,698,764	+		HSERO_RS20505	0.17	+0.6
4,698,764	+		HSERO_RS20505	0.17	-0.3
4,698,772	-		HSERO_RS20505	0.18	+0.1
4,698,772	-		HSERO_RS20505	0.18	-0.2
4,698,772	-		HSERO_RS20505	0.18	+0.1
4,698,772	-		HSERO_RS20505	0.18	-0.9
4,698,772	-		HSERO_RS20505	0.18	+0.6
4,698,772	-		HSERO_RS20505	0.18	+0.0
4,698,772	-		HSERO_RS20505	0.18	+0.8
4,698,797	+		HSERO_RS20505	0.20	-0.5
4,698,864	+		HSERO_RS20505	0.25	-0.6
4,698,874	+		HSERO_RS20505	0.26	+0.2
4,698,874	+		HSERO_RS20505	0.26	+0.5
4,698,882	-		HSERO_RS20505	0.27	+0.3
4,698,885	+		HSERO_RS20505	0.27	+0.7
4,698,905	+		HSERO_RS20505	0.28	+0.4
4,698,913	-		HSERO_RS20505	0.29	-0.8
4,698,913	-		HSERO_RS20505	0.29	-1.1
4,698,915	+		HSERO_RS20505	0.29	+0.3
4,698,915	+		HSERO_RS20505	0.29	+0.2
4,698,947	+		HSERO_RS20505	0.32	-0.5
4,699,056	+		HSERO_RS20505	0.40	-0.1
4,699,156	-		HSERO_RS20505	0.48	+0.2
4,699,158	-		HSERO_RS20505	0.48	+1.2
4,699,173	+		HSERO_RS20505	0.50	+0.5
4,699,178	+		HSERO_RS20505	0.50	+0.8
4,699,178	+		HSERO_RS20505	0.50	-0.0
4,699,186	-		HSERO_RS20505	0.51	+0.5
4,699,190	+		HSERO_RS20505	0.51	-0.2
4,699,222	+		HSERO_RS20505	0.53	-0.8
4,699,222	+		HSERO_RS20505	0.53	+0.3
4,699,239	-		HSERO_RS20505	0.55	-0.8
4,699,246	+		HSERO_RS20505	0.55	+0.1
4,699,269	+		HSERO_RS20505	0.57	-0.3
4,699,269	+		HSERO_RS20505	0.57	-0.2
4,699,276	+		HSERO_RS20505	0.58	-0.3
4,699,276	+		HSERO_RS20505	0.58	-0.0
4,699,277	-		HSERO_RS20505	0.58	+2.1
4,699,284	-				+1.1
4,699,311	+		HSERO_RS20505	0.61	-0.1
4,699,316	+		HSERO_RS20505	0.61	-0.8
4,699,335	+		HSERO_RS20505	0.62	-0.2
4,699,393	-		HSERO_RS20505	0.67	+0.4
4,699,450	-		HSERO_RS20505	0.71	+2.5
4,699,452	-		HSERO_RS20505	0.72	+0.1
4,699,452	-		HSERO_RS20505	0.72	-1.0
4,699,473	-		HSERO_RS20505	0.73	+0.2
4,699,473	-		HSERO_RS20505	0.73	+1.8
4,699,488	-		HSERO_RS20505	0.74	+1.1
4,699,518	-		HSERO_RS20505	0.77	-0.7
4,699,518	-		HSERO_RS20505	0.77	+0.5
4,699,616	-		HSERO_RS20505	0.85	-0.5
4,699,638	-		HSERO_RS20505	0.86	+2.4
4,699,650	+		HSERO_RS20505	0.87	-0.7
4,699,657	+		HSERO_RS20505	0.88	-1.2
4,699,729	+				+2.0
4,699,729	+				-0.1
4,699,737	-				-0.2
4,699,743	-				-0.4
4,699,761	-				-2.7
4,699,765	+				-0.1
4,699,803	+				+0.3
4,699,806	-				-0.3
4,699,811	-				+1.4
4,699,818	-				+2.1
4,699,943	-				-0.3
4,699,960	-				-0.6
4,700,001	+				-0.2
4,700,008	+				+0.1
4,700,008	+				-0.6
4,700,014	-				-1.7
4,700,016	-				+0.7
4,700,047	+				+0.4
4,700,061	-		HSERO_RS20510	0.10	-0.8
4,700,066	+		HSERO_RS20510	0.11	+0.6
4,700,074	-		HSERO_RS20510	0.11	+0.7
4,700,122	+		HSERO_RS20510	0.14	+1.0
4,700,122	+		HSERO_RS20510	0.14	+0.3
4,700,124	+		HSERO_RS20510	0.14	+0.6
4,700,130	-		HSERO_RS20510	0.15	-0.5
4,700,177	+		HSERO_RS20510	0.18	+1.0
4,700,179	+		HSERO_RS20510	0.18	+0.2
4,700,230	+				-0.9
4,700,230	+		HSERO_RS20510	0.21	+0.6
4,700,230	+		HSERO_RS20510	0.21	-1.1
4,700,230	+		HSERO_RS20510	0.21	-0.0
4,700,230	+		HSERO_RS20510	0.21	-1.1
4,700,230	+		HSERO_RS20510	0.21	+1.1
4,700,231	-		HSERO_RS20510	0.21	+0.2
4,700,238	-		HSERO_RS20510	0.21	+0.4
4,700,238	-		HSERO_RS20510	0.21	+0.6
4,700,238	-		HSERO_RS20510	0.21	+2.1
4,700,275	+		HSERO_RS20510	0.24	-0.6
4,700,300	-		HSERO_RS20510	0.25	+0.6
4,700,308	+		HSERO_RS20510	0.26	+2.0
4,700,308	+		HSERO_RS20510	0.26	-0.0
4,700,314	+		HSERO_RS20510	0.26	-0.4
4,700,316	-		HSERO_RS20510	0.26	+2.0
4,700,350	-		HSERO_RS20510	0.28	+0.6
4,700,352	+		HSERO_RS20510	0.28	+0.3
4,700,360	-		HSERO_RS20510	0.29	-1.0
4,700,429	-		HSERO_RS20510	0.33	+0.2
4,700,438	+		HSERO_RS20510	0.33	-1.0
4,700,446	-		HSERO_RS20510	0.34	-0.9
4,700,446	-		HSERO_RS20510	0.34	+0.9
4,700,446	-		HSERO_RS20510	0.34	+0.3
4,700,446	-		HSERO_RS20510	0.34	-0.3
4,700,446	-		HSERO_RS20510	0.34	-0.0
4,700,446	-		HSERO_RS20510	0.34	+0.1
4,700,481	+		HSERO_RS20510	0.36	+0.6
4,700,481	+		HSERO_RS20510	0.36	-0.2
4,700,481	+		HSERO_RS20510	0.36	+0.0
4,700,489	-		HSERO_RS20510	0.37	-1.1
4,700,489	-		HSERO_RS20510	0.37	+0.4
4,700,489	-		HSERO_RS20510	0.37	+0.2
4,700,512	-		HSERO_RS20510	0.38	-0.4
4,700,512	-		HSERO_RS20510	0.38	-1.0
4,700,540	-		HSERO_RS20510	0.40	-0.3
4,700,613	+		HSERO_RS20510	0.44	-1.1
4,700,680	+		HSERO_RS20510	0.48	-0.0
4,700,688	-		HSERO_RS20510	0.49	+0.4
4,700,716	+		HSERO_RS20510	0.50	-1.7
4,700,724	-		HSERO_RS20510	0.51	-0.3
4,700,767	+		HSERO_RS20510	0.54	-0.4
4,700,773	-		HSERO_RS20510	0.54	+0.4
4,700,773	-		HSERO_RS20510	0.54	-0.0
4,700,773	-		HSERO_RS20510	0.54	+0.2
4,700,775	-		HSERO_RS20510	0.54	+0.4
4,700,775	-		HSERO_RS20510	0.54	+0.6
4,700,775	-		HSERO_RS20510	0.54	+0.6