Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS15285

Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
3,498,749	-		HSERO_RS15280	0.31	+1.8
3,498,796	-		HSERO_RS15280	0.35	+1.4
3,498,903	+		HSERO_RS15280	0.44	+0.6
3,498,905	+		HSERO_RS15280	0.44	-0.0
3,498,911	-		HSERO_RS15280	0.45	-1.1
3,499,140	+		HSERO_RS15280	0.65	-0.4
3,499,199	+		HSERO_RS15280	0.70	+0.4
3,499,295	-		HSERO_RS15280	0.78	+0.4
3,499,298	+		HSERO_RS15280	0.78	+0.0
3,499,385	+		HSERO_RS15280	0.86	-1.5
3,499,579	+				+1.3
3,499,580	+				-0.2
3,499,696	+				-0.1
3,499,822	+		HSERO_RS15285	0.11	-0.0
3,499,835	+		HSERO_RS15285	0.12	-0.0
3,500,083	-		HSERO_RS15285	0.24	-0.4
3,500,168	-		HSERO_RS15285	0.28	-0.1
3,500,350	+		HSERO_RS15285	0.37	-0.9
3,500,358	-		HSERO_RS15285	0.37	-0.4
3,500,399	+		HSERO_RS15285	0.39	+0.2
3,500,399	+		HSERO_RS15285	0.39	-1.5
3,500,407	-		HSERO_RS15285	0.39	-0.1
3,500,469	+				+0.3
3,500,726	+		HSERO_RS15285	0.55	-0.2
3,500,734	+		HSERO_RS15285	0.55	-0.9
3,500,840	-		HSERO_RS15285	0.60	-0.7
3,500,948	-		HSERO_RS15285	0.65	-1.3
3,500,948	-		HSERO_RS15285	0.65	-0.8
3,501,125	-		HSERO_RS15285	0.74	-3.3
3,501,131	-		HSERO_RS15285	0.74	-0.2
3,501,181	+		HSERO_RS15285	0.76	-0.3
3,501,194	-		HSERO_RS15285	0.77	-0.4
3,501,304	-		HSERO_RS15285	0.82	-0.8
3,501,448	+		HSERO_RS15285	0.89	-0.6
3,501,494	+				-1.7
3,501,502	-				-0.4
3,501,539	+				-0.3
3,501,540	+				-0.2
3,501,548	-				-0.8
3,501,647	+				+0.4
3,501,648	-				-0.2
3,501,648	-				-0.1
3,501,648	-				+1.1
3,501,660	-				+0.4
3,501,665	-				+1.0
3,501,693	+				+0.2
3,501,699	+				+0.1
3,501,728	-				+0.5
3,501,729	-				+0.1
3,501,738	+				+0.1
3,501,739	-				+0.7
3,501,740	-				+0.2
3,501,755	-				+0.0
3,501,755	-				+2.2
3,501,763	-				-0.5
3,501,764	+				-0.9
3,501,766	+				-0.4
3,501,767	-				-1.5
3,501,768	-				-0.1
3,501,772	-				+0.0
3,501,774	-				+0.3
3,501,839	+				-0.8
3,501,839	+				-0.6
3,501,839	+				+0.2
3,501,839	+				-0.1
3,501,847	+				+1.7
3,501,847	-				-0.2
3,501,847	-				-0.5
3,501,858	+				-0.1
3,501,858	+				-0.7
3,501,858	-				-2.0
3,501,859	+				-0.4
3,501,868	+				-0.5
3,501,869	+				-0.6
3,501,869	+				-0.9
3,501,874	+				+0.2
3,501,874	+				-0.4
3,501,877	-				+0.6
3,501,879	+				-0.6
3,501,879	+				+0.4
3,501,879	+				-2.4
3,501,879	+				-0.2
3,501,879	+				+0.0
3,501,882	-				+0.5
3,501,886	+				+0.1
3,501,887	-				-0.9
3,501,887	-				+1.1
3,501,887	-				-1.9
3,501,887	-				-0.0
3,501,887	-				-0.5
3,501,887	-				-0.5
3,501,887	-				+0.3
3,501,887	-				-0.3
3,501,887	-				+0.2
3,501,887	-				+0.9
3,501,887	-				-0.2
3,501,887	-				-1.0
3,501,887	-				-0.5
3,501,887	-				-1.6
3,501,887	-				-1.9
3,501,891	+				-0.4
3,501,927	+				-0.9
3,501,927	+				-2.8
3,501,935	-				+0.9
3,501,935	-				-1.5
3,501,935	-				-0.4
3,501,935	-				-0.5
3,501,935	-				-0.0
3,501,956	-				-1.2
3,501,980	+				-1.8
3,501,980	+				-0.1
3,501,987	+				+0.3
3,501,990	-				-0.1
3,502,047	+				+0.3
3,502,049	+				+0.4
3,502,055	-				-0.0
3,502,059	+				+1.5
3,502,059	+				-0.2
3,502,059	-				-0.4
3,502,065	-				-0.1
3,502,065	-				-0.4
3,502,067	-				-1.0
3,502,067	-				+0.1
3,502,067	-				-1.3
3,502,067	-				-1.0
3,502,088	+				+0.3
3,502,095	+				+0.5
3,502,095	+				-0.5
3,502,096	+				+0.9
3,502,096	+				-1.2
3,502,096	+				-0.2
3,502,096	+				-0.2
3,502,096	+				+1.7
3,502,098	+				-1.4
3,502,098	+				+0.0
3,502,104	-				-0.4
3,502,104	-				-1.1
3,502,104	-				+0.2
3,502,108	+				+0.4
3,502,108	+				-0.5
3,502,108	+				+0.5
3,502,109	+				+0.4
3,502,109	+				-0.7
3,502,115	+				+1.9
3,502,115	+				-0.3
3,502,116	+				+0.1
3,502,116	-				+0.4
3,502,124	-				-0.9
3,502,124	-				+0.1
3,502,177	+				+0.5
3,502,177	+				+1.1
3,502,177	+				+1.6
3,502,182	+				-0.2
3,502,182	+				-1.4
3,502,182	+				+0.3
3,502,182	+				+0.6
3,502,182	+				-0.5
3,502,182	+				-0.1
3,502,182	+				-0.4
3,502,182	+				-2.2
3,502,182	+				-0.7
3,502,182	+				-2.6
3,502,182	+				-0.2
3,502,182	+				+1.8
3,502,182	+				-0.3
3,502,182	+				+0.6
3,502,182	+				-0.9
3,502,182	+				+0.5
3,502,182	+				+0.5
3,502,182	+				+0.9
3,502,182	+				-0.3
3,502,182	+				+0.1
3,502,182	+				-0.2
3,502,182	+				-1.6
3,502,182	+				+0.7
3,502,185	-				-0.6
3,502,187	+				+0.4
3,502,187	+				+0.2
3,502,187	+				+0.7
3,502,187	+				-0.5
3,502,187	+				-0.6
3,502,187	+				+0.0
3,502,187	+				-1.0
3,502,187	+				-1.9
3,502,187	+				-1.4
3,502,187	+				-2.0
3,502,187	+				-0.3
3,502,187	+				+0.3
3,502,187	+				+0.2
3,502,187	+				+0.7
3,502,187	+				-1.5
3,502,187	+				-0.7
3,502,187	+				+0.3
3,502,187	+				+1.5
3,502,187	+				-0.4
3,502,187	+				-1.0
3,502,187	+				-2.6
3,502,187	+				+1.5
3,502,187	+				-0.1
3,502,190	-				-1.1
3,502,190	-				+1.2
3,502,190	-				+0.9
3,502,190	-				+0.3
3,502,190	-				+0.0
3,502,190	-				-0.7
3,502,190	-				-0.5
3,502,190	-				-0.2
3,502,190	-				-1.0
3,502,190	-				-1.2
3,502,190	-				-0.4
3,502,190	-				-0.0
3,502,190	-				-0.7
3,502,190	-				-2.9
3,502,190	-				-0.2
3,502,190	-				+0.6
3,502,190	-				+0.4
3,502,195	-				-0.6
3,502,195	-				-0.8
3,502,195	-				-2.1
3,502,195	-				+0.3
3,502,195	-				-0.9
3,502,195	-				+0.7
3,502,195	-				+1.3
3,502,195	-				+0.1
3,502,195	-				-0.6
3,502,195	-				-1.7
3,502,197	-				-3.0
3,502,222	+				+0.5
3,502,230	-				-0.0
3,502,230	-				-0.4
3,502,268	+				+0.3
3,502,268	+				-1.2
3,502,268	+				-0.6
3,502,268	+				-0.2
3,502,268	+				-0.2
3,502,268	+				-0.4
3,502,269	+				-1.4
3,502,269	+				-0.4
3,502,269	+				+1.8
3,502,269	+				-0.5
3,502,269	+				-0.3
3,502,269	+				+1.6
3,502,269	+				-0.1
3,502,275	-				+0.0
3,502,276	+				+0.5
3,502,276	+				+0.1
3,502,276	-				-0.3
3,502,276	-				-0.6
3,502,276	-				-1.4
3,502,276	-				+0.7
3,502,277	-				-0.3
3,502,277	-				-0.8
3,502,277	-				-0.1
3,502,277	-				-0.8
3,502,277	-				-0.2
3,502,277	-				-1.0
3,502,277	-				-0.6
3,502,278	+				+0.4
3,502,278	+				+1.2
3,502,278	+				-0.9
3,502,278	+				+2.1
3,502,279	+				-0.2
3,502,279	+				-0.9
3,502,282	+				-0.7
3,502,284	+				-0.7
3,502,284	+				+0.5
3,502,284	+				-1.2
3,502,284	+				-1.4
3,502,284	+				+0.1
3,502,284	+				-0.7
3,502,284	+				+0.0
3,502,284	+				+0.2
3,502,284	+				-0.4
3,502,284	+				+0.8
3,502,284	+				-0.2
3,502,284	+				+2.6
3,502,284	+				-1.1
3,502,284	+				+0.1
3,502,284	+				+0.2
3,502,284	+				+4.2
3,502,284	-				+0.3
3,502,286	-				+1.0
3,502,286	-				-0.3
3,502,287	-				-0.8
3,502,287	-				+0.4
3,502,287	-				-2.4
3,502,287	-				+0.3
3,502,287	-				-0.2
3,502,287	-				+2.1
3,502,287	-				+1.8
3,502,287	-				+0.0
3,502,287	-				-0.3
3,502,292	-				-0.1
3,502,292	-				-1.2
3,502,292	-				+1.3
3,502,292	-				+0.2
3,502,292	-				-0.6
3,502,292	-				-1.0
3,502,292	-				+0.0
3,502,292	-				-0.1
3,502,292	-				-1.8
3,502,292	-				+0.3
3,502,292	-				+1.6
3,502,292	-				+0.2
3,502,292	-				-0.3
3,502,292	-				+0.2
3,502,297	-				-0.5
3,502,297	-				-1.5
3,502,299	-				+0.1
3,502,299	-				-0.6
3,502,319	-				-0.7
3,502,325	+				+0.4
3,502,334	+				+0.0
3,502,334	+				+0.7
3,502,337	-				+0.7
3,502,341	-				+0.2
3,502,342	-				+0.1
3,502,350	+				-0.7
3,502,363	+				+0.1
3,502,363	+				-0.5
3,502,364	-				+0.7
3,502,365	+				-1.0
3,502,366	+				-1.0
3,502,366	+				+0.5
3,502,366	-				+0.1
3,502,376	-				+0.1
3,502,376	-				-0.2
3,502,379	+				+0.0
3,502,381	-				+1.5
3,502,387	+				+0.8
3,502,387	-				-0.1
3,502,390	-				-1.2
3,502,392	+				+0.1
3,502,397	-				-1.0
3,502,397	-				+1.4
3,502,400	-				-0.0
3,502,400	-				-1.0
3,502,400	-				+0.9
3,502,417	+				-0.7
3,502,419	+				-0.2
3,502,419	+				-1.0
3,502,425	-				-0.5
3,502,431	-				+1.2
3,502,433	-				+0.8
3,502,433	-				-1.3
3,502,433	-				-0.5
3,502,455	+				+1.5
3,502,500	+				+0.5
3,502,505	+				-0.6
3,502,514	+				-0.3
3,502,514	+				-0.3
3,502,514	+				-0.2
3,502,519	+				-1.0
3,502,519	+				-1.8
3,502,519	+				-1.2
3,502,519	+				+0.4
3,502,520	+				-0.7
3,502,520	+				+0.1
3,502,520	+				-0.4
3,502,520	+				-1.5
3,502,520	+				-1.5
3,502,520	+				+1.3
3,502,520	+				+1.8
3,502,520	+				-1.8
3,502,520	+				-0.4
3,502,520	+				+0.8
3,502,522	-				+0.1
3,502,525	+				+1.2
3,502,527	-				+0.6
3,502,527	-				+1.1
3,502,527	-				+0.7
3,502,527	-				-0.6
3,502,527	-				-0.3
3,502,527	-				-0.6
3,502,527	-				+0.0
3,502,528	-				+0.7
3,502,528	-				+1.7
3,502,528	-				-0.1
3,502,528	-				+1.2
3,502,528	-				+0.6
3,502,528	-				-1.0
3,502,528	-				-0.1
3,502,528	-				-0.2
3,502,528	-				-0.4
3,502,528	-				-1.4
3,502,528	-				+0.2
3,502,528	-				-0.6
3,502,528	-				-1.1
3,502,528	-				+1.1
3,502,528	-				+0.2
3,502,528	-				+2.3
3,502,528	-				+0.2
3,502,528	-				-2.3
3,502,528	-				-0.7
3,502,528	-				+0.4
3,502,528	-				+1.4
3,502,534	+				+0.3
3,502,538	-				-0.4
3,502,540	+				+0.3
3,502,547	-				-1.1
3,502,548	+				-0.3
3,502,548	-				+0.8
3,502,548	-				+0.4
3,502,549	+				-0.9
3,502,554	+				+0.8
3,502,556	-				-0.4
3,502,560	+				-2.5
3,502,560	+				+0.5
3,502,561	+				+0.4
3,502,561	+				-0.6
3,502,561	+				+0.3
3,502,561	+				-0.5
3,502,561	+				+0.7
3,502,561	+				+0.8
3,502,561	+				-0.2
3,502,563	-				+0.1
3,502,568	+				-0.7
3,502,568	+				-0.9
3,502,568	-				+1.7
3,502,568	-				-0.7
3,502,569	-				+0.1
3,502,569	-				-0.5
3,502,569	-				+0.8
3,502,571	-				+0.4
3,502,571	-				+0.8
3,502,588	+				+0.3
3,502,592	+				-0.5
3,502,596	+				+0.3
3,502,596	+				-0.4
3,502,596	+				+0.9
3,502,596	+				+0.3
3,502,596	+				-0.5
3,502,596	+				+0.1
3,502,596	-				-0.3
3,502,596	-				+2.2
3,502,597	+				-2.2
3,502,597	+				+0.4
3,502,597	+				-0.8
3,502,597	+				-0.7
3,502,597	+				+0.8
3,502,598	+				+0.1
3,502,599	-				+0.3
3,502,605	-				-0.8
3,502,605	-				+0.8
3,502,605	-				+0.0
3,502,605	-				+0.3
3,502,605	-				-1.7
3,502,605	-				-0.4
3,502,605	-				+0.1
3,502,605	-				-0.5
3,502,605	-				+0.1
3,502,605	-				-1.2
3,502,605	-				-1.4
3,502,605	-				-1.1
3,502,605	-				-0.6
3,502,605	-				+0.9
3,502,605	-				+0.3
3,502,607	+				-0.6
3,502,615	-				+0.9
3,502,615	-				+0.2
3,502,627	+				-0.5
3,502,628	-				-0.0
3,502,634	-				-0.1
3,502,639	+				-0.9
3,502,647	-				-1.2
3,502,647	-				+0.2
3,502,647	-				-0.4
3,502,647	-				+1.1
3,502,647	-				+0.3
3,502,647	-				+0.5
3,502,653	+				-0.3
3,502,661	-				+1.2
3,502,661	-				+0.3
3,502,666	+				+0.6
3,502,674	-				-1.1
3,502,674	-				-0.3
3,502,674	-				+0.4
3,502,674	-				+0.1