Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04195 and HSERO_RS04200 are separated by 447 nucleotides HSERO_RS04200 and HSERO_RS04205 are separated by 345 nucleotides
HSERO_RS04195: HSERO_RS04195 - methyl-accepting chemotaxis protein, at 918,591 to 920,564
_RS04195
HSERO_RS04200: HSERO_RS04200 - diguanylate cyclase, at 921,012 to 923,954
_RS04200
HSERO_RS04205: HSERO_RS04205 - membrane protein, at 924,300 to 924,962
_RS04205
Position (kb) 921
922
923
924 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 920.286 kb on - strand, within HSERO_RS04195 at 920.329 kb on + strand, within HSERO_RS04195 at 920.357 kb on - strand at 920.407 kb on - strand at 920.535 kb on + strand at 920.536 kb on - strand at 920.630 kb on - strand at 920.753 kb on - strand at 920.907 kb on + strand at 920.917 kb on + strand at 921.053 kb on - strand at 921.077 kb on + strand at 921.180 kb on + strand at 921.201 kb on + strand at 921.209 kb on - strand at 921.278 kb on - strand at 921.485 kb on + strand, within HSERO_RS04200 at 921.536 kb on + strand, within HSERO_RS04200 at 921.837 kb on - strand, within HSERO_RS04200 at 921.861 kb on + strand, within HSERO_RS04200 at 921.869 kb on - strand, within HSERO_RS04200 at 921.908 kb on + strand, within HSERO_RS04200 at 921.927 kb on - strand, within HSERO_RS04200 at 922.006 kb on + strand, within HSERO_RS04200 at 922.014 kb on - strand, within HSERO_RS04200 at 922.023 kb on - strand, within HSERO_RS04200 at 922.069 kb on - strand, within HSERO_RS04200 at 922.102 kb on + strand, within HSERO_RS04200 at 922.151 kb on + strand, within HSERO_RS04200 at 922.159 kb on - strand, within HSERO_RS04200 at 922.213 kb on + strand, within HSERO_RS04200 at 922.330 kb on + strand, within HSERO_RS04200 at 922.351 kb on - strand, within HSERO_RS04200 at 922.364 kb on + strand, within HSERO_RS04200 at 922.385 kb on - strand, within HSERO_RS04200 at 922.385 kb on - strand, within HSERO_RS04200 at 922.513 kb on + strand, within HSERO_RS04200 at 922.688 kb on + strand, within HSERO_RS04200 at 922.796 kb on + strand, within HSERO_RS04200 at 922.881 kb on + strand, within HSERO_RS04200 at 922.951 kb on - strand, within HSERO_RS04200 at 923.187 kb on + strand, within HSERO_RS04200 at 923.251 kb on - strand, within HSERO_RS04200 at 923.324 kb on + strand, within HSERO_RS04200 at 923.332 kb on - strand, within HSERO_RS04200 at 923.724 kb on + strand at 923.750 kb on + strand at 923.826 kb on - strand at 923.943 kb on - strand at 923.994 kb on + strand at 924.003 kb on - strand at 924.096 kb on + strand at 924.296 kb on - strand at 924.359 kb on + strand at 924.363 kb on + strand at 924.380 kb on + strand, within HSERO_RS04205 at 924.403 kb on - strand at 924.588 kb on + strand, within HSERO_RS04205 at 924.743 kb on - strand, within HSERO_RS04205 at 924.761 kb on + strand, within HSERO_RS04205 at 924.782 kb on + strand, within HSERO_RS04205
Per-strain Table
Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB remove 920,286 - HSERO_RS04195 0.86 -0.9 920,329 + HSERO_RS04195 0.88 -1.1 920,357 - +2.4 920,407 - -0.4 920,535 + -1.0 920,536 - -0.4 920,630 - -1.5 920,753 - +0.5 920,907 + -0.8 920,917 + -0.1 921,053 - -0.3 921,077 + -2.1 921,180 + -1.6 921,201 + -0.5 921,209 - -1.4 921,278 - -0.0 921,485 + HSERO_RS04200 0.16 +0.1 921,536 + HSERO_RS04200 0.18 +0.4 921,837 - HSERO_RS04200 0.28 +0.9 921,861 + HSERO_RS04200 0.29 +1.5 921,869 - HSERO_RS04200 0.29 +1.1 921,908 + HSERO_RS04200 0.30 -0.1 921,927 - HSERO_RS04200 0.31 -1.9 922,006 + HSERO_RS04200 0.34 -0.3 922,014 - HSERO_RS04200 0.34 +0.4 922,023 - HSERO_RS04200 0.34 -2.2 922,069 - HSERO_RS04200 0.36 -0.6 922,102 + HSERO_RS04200 0.37 -0.2 922,151 + HSERO_RS04200 0.39 -0.4 922,159 - HSERO_RS04200 0.39 +2.0 922,213 + HSERO_RS04200 0.41 -2.4 922,330 + HSERO_RS04200 0.45 +0.5 922,351 - HSERO_RS04200 0.45 +0.2 922,364 + HSERO_RS04200 0.46 +0.6 922,385 - HSERO_RS04200 0.47 -0.1 922,385 - HSERO_RS04200 0.47 +0.5 922,513 + HSERO_RS04200 0.51 -1.5 922,688 + HSERO_RS04200 0.57 +2.1 922,796 + HSERO_RS04200 0.61 -1.9 922,881 + HSERO_RS04200 0.64 -0.9 922,951 - HSERO_RS04200 0.66 -2.9 923,187 + HSERO_RS04200 0.74 -0.1 923,251 - HSERO_RS04200 0.76 +1.0 923,324 + HSERO_RS04200 0.79 -0.7 923,332 - HSERO_RS04200 0.79 -0.7 923,724 + -0.2 923,750 + +0.5 923,826 - -3.1 923,943 - +0.3 923,994 + -1.2 924,003 - +0.7 924,096 + -0.5 924,296 - +0.1 924,359 + -0.6 924,363 + -1.1 924,380 + HSERO_RS04205 0.12 +1.3 924,403 - +1.1 924,588 + HSERO_RS04205 0.43 -0.3 924,743 - HSERO_RS04205 0.67 +0.4 924,761 + HSERO_RS04205 0.70 -0.0 924,782 + HSERO_RS04205 0.73 +1.6
Or see this region's nucleotide sequence