Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01275 and HSERO_RS01280 are separated by 134 nucleotides HSERO_RS01280 and HSERO_RS01285 are separated by 41 nucleotides
HSERO_RS01275: HSERO_RS01275 - FAD-dependent oxidoreductase, at 269,035 to 270,312
_RS01275
HSERO_RS01280: HSERO_RS01280 - methyl-accepting chemotaxis protein, at 270,447 to 272,240
_RS01280
HSERO_RS01285: HSERO_RS01285 - diguanylate cyclase, at 272,282 to 273,436
_RS01285
Position (kb) 270
271
272
273 Strain fitness (log2 ratio) -2
-1
0
1 at 269.648 kb on + strand, within HSERO_RS01275 at 269.656 kb on - strand, within HSERO_RS01275 at 269.697 kb on - strand, within HSERO_RS01275 at 269.826 kb on - strand at 270.119 kb on - strand, within HSERO_RS01275 at 270.119 kb on - strand, within HSERO_RS01275 at 270.157 kb on + strand, within HSERO_RS01275 at 270.163 kb on + strand, within HSERO_RS01275 at 270.165 kb on - strand, within HSERO_RS01275 at 270.414 kb on + strand at 270.668 kb on + strand, within HSERO_RS01280 at 270.689 kb on + strand, within HSERO_RS01280 at 270.816 kb on - strand, within HSERO_RS01280 at 270.925 kb on - strand, within HSERO_RS01280 at 271.114 kb on - strand, within HSERO_RS01280 at 271.178 kb on + strand, within HSERO_RS01280 at 271.213 kb on + strand, within HSERO_RS01280 at 271.250 kb on - strand, within HSERO_RS01280 at 271.263 kb on + strand, within HSERO_RS01280 at 271.352 kb on - strand, within HSERO_RS01280 at 271.585 kb on + strand, within HSERO_RS01280 at 271.881 kb on + strand, within HSERO_RS01280 at 271.883 kb on - strand, within HSERO_RS01280 at 272.225 kb on + strand at 272.225 kb on + strand at 272.265 kb on + strand at 272.334 kb on + strand at 272.391 kb on + strand at 272.399 kb on - strand, within HSERO_RS01285 at 272.474 kb on + strand, within HSERO_RS01285 at 272.641 kb on + strand, within HSERO_RS01285 at 272.696 kb on + strand, within HSERO_RS01285 at 272.735 kb on - strand, within HSERO_RS01285 at 272.987 kb on + strand, within HSERO_RS01285 at 272.995 kb on - strand, within HSERO_RS01285 at 273.000 kb on + strand, within HSERO_RS01285 at 273.107 kb on - strand, within HSERO_RS01285 at 273.207 kb on - strand, within HSERO_RS01285
Per-strain Table
Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB remove 269,648 + HSERO_RS01275 0.48 -0.5 269,656 - HSERO_RS01275 0.49 +0.0 269,697 - HSERO_RS01275 0.52 -0.8 269,826 - +0.7 270,119 - HSERO_RS01275 0.85 +1.0 270,119 - HSERO_RS01275 0.85 +0.2 270,157 + HSERO_RS01275 0.88 -0.2 270,163 + HSERO_RS01275 0.88 -0.5 270,165 - HSERO_RS01275 0.88 -1.1 270,414 + -1.8 270,668 + HSERO_RS01280 0.12 -1.4 270,689 + HSERO_RS01280 0.13 -2.3 270,816 - HSERO_RS01280 0.21 +0.1 270,925 - HSERO_RS01280 0.27 +0.5 271,114 - HSERO_RS01280 0.37 +0.3 271,178 + HSERO_RS01280 0.41 -0.2 271,213 + HSERO_RS01280 0.43 -0.3 271,250 - HSERO_RS01280 0.45 -0.6 271,263 + HSERO_RS01280 0.45 -2.2 271,352 - HSERO_RS01280 0.50 +0.2 271,585 + HSERO_RS01280 0.63 -0.1 271,881 + HSERO_RS01280 0.80 -0.0 271,883 - HSERO_RS01280 0.80 -0.4 272,225 + -0.8 272,225 + +0.5 272,265 + +0.2 272,334 + +1.6 272,391 + +0.0 272,399 - HSERO_RS01285 0.10 +0.5 272,474 + HSERO_RS01285 0.17 -0.7 272,641 + HSERO_RS01285 0.31 -0.5 272,696 + HSERO_RS01285 0.36 +0.0 272,735 - HSERO_RS01285 0.39 -1.8 272,987 + HSERO_RS01285 0.61 +0.4 272,995 - HSERO_RS01285 0.62 -2.2 273,000 + HSERO_RS01285 0.62 -0.4 273,107 - HSERO_RS01285 0.71 +0.0 273,207 - HSERO_RS01285 0.80 +0.7
Or see this region's nucleotide sequence