Experiment: Nalidixic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS14315 and ABZR86_RS14320 are separated by 387 nucleotides ABZR86_RS14320 and ABZR86_RS14325 are separated by 143 nucleotides
ABZR86_RS14315: ABZR86_RS14315 - antibiotic hydrolase, at 3,188,215 to 3,189,393
_RS14315
ABZR86_RS14320: ABZR86_RS14320 - RICIN domain-containing protein, at 3,189,781 to 3,190,233
_RS14320
ABZR86_RS14325: ABZR86_RS14325 - EamA family transporter, at 3,190,377 to 3,191,261
_RS14325
Position (kb)
3189
3190
3191 Strain fitness (log2 ratio)
-1
0
1 at 3188.786 kb on - strand, within ABZR86_RS14315 at 3188.857 kb on + strand, within ABZR86_RS14315 at 3188.857 kb on + strand, within ABZR86_RS14315 at 3188.932 kb on + strand, within ABZR86_RS14315 at 3188.933 kb on - strand, within ABZR86_RS14315 at 3188.933 kb on - strand, within ABZR86_RS14315 at 3188.935 kb on + strand, within ABZR86_RS14315 at 3189.261 kb on + strand, within ABZR86_RS14315 at 3189.261 kb on + strand, within ABZR86_RS14315 at 3189.261 kb on + strand, within ABZR86_RS14315 at 3189.262 kb on - strand, within ABZR86_RS14315 at 3189.287 kb on - strand at 3189.287 kb on - strand at 3189.289 kb on + strand at 3189.289 kb on + strand at 3189.290 kb on - strand at 3189.486 kb on + strand at 3189.486 kb on + strand at 3189.486 kb on + strand at 3189.487 kb on - strand at 3189.487 kb on - strand at 3189.496 kb on - strand at 3189.556 kb on + strand at 3189.556 kb on + strand at 3189.557 kb on - strand at 3189.582 kb on + strand at 3189.582 kb on + strand at 3189.583 kb on - strand at 3189.583 kb on - strand at 3189.583 kb on - strand at 3189.796 kb on + strand at 3189.796 kb on + strand at 3189.796 kb on + strand at 3189.796 kb on + strand at 3189.796 kb on + strand at 3189.797 kb on - strand at 3189.797 kb on - strand at 3189.797 kb on - strand at 3189.797 kb on - strand at 3189.797 kb on - strand at 3189.797 kb on - strand at 3189.797 kb on - strand at 3189.964 kb on + strand, within ABZR86_RS14320 at 3189.964 kb on + strand, within ABZR86_RS14320 at 3190.029 kb on + strand, within ABZR86_RS14320 at 3190.029 kb on + strand, within ABZR86_RS14320 at 3190.054 kb on + strand, within ABZR86_RS14320 at 3190.300 kb on - strand at 3190.742 kb on - strand, within ABZR86_RS14325 at 3190.774 kb on + strand, within ABZR86_RS14325 at 3190.774 kb on + strand, within ABZR86_RS14325 at 3190.774 kb on + strand, within ABZR86_RS14325 at 3190.774 kb on + strand, within ABZR86_RS14325 at 3190.774 kb on + strand, within ABZR86_RS14325 at 3190.774 kb on + strand, within ABZR86_RS14325 at 3190.775 kb on - strand, within ABZR86_RS14325 at 3190.775 kb on - strand, within ABZR86_RS14325 at 3190.775 kb on - strand, within ABZR86_RS14325 at 3190.775 kb on - strand, within ABZR86_RS14325 at 3190.775 kb on - strand, within ABZR86_RS14325 at 3190.775 kb on - strand, within ABZR86_RS14325 at 3190.775 kb on - strand, within ABZR86_RS14325 at 3190.775 kb on - strand, within ABZR86_RS14325 at 3190.775 kb on - strand, within ABZR86_RS14325 at 3190.807 kb on + strand, within ABZR86_RS14325 at 3190.807 kb on + strand, within ABZR86_RS14325 at 3190.807 kb on + strand, within ABZR86_RS14325 at 3190.807 kb on + strand, within ABZR86_RS14325 at 3190.807 kb on + strand, within ABZR86_RS14325 at 3190.808 kb on - strand, within ABZR86_RS14325 at 3190.808 kb on - strand, within ABZR86_RS14325 at 3190.996 kb on + strand, within ABZR86_RS14325 at 3190.996 kb on + strand, within ABZR86_RS14325 at 3190.996 kb on + strand, within ABZR86_RS14325 at 3190.996 kb on + strand, within ABZR86_RS14325 at 3190.996 kb on + strand, within ABZR86_RS14325 at 3190.996 kb on + strand, within ABZR86_RS14325 at 3190.997 kb on - strand, within ABZR86_RS14325 at 3190.997 kb on - strand, within ABZR86_RS14325 at 3191.032 kb on + strand, within ABZR86_RS14325 at 3191.125 kb on + strand, within ABZR86_RS14325 at 3191.191 kb on + strand at 3191.192 kb on - strand at 3191.192 kb on - strand at 3191.192 kb on - strand at 3191.192 kb on - strand at 3191.192 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.02 mg/ml remove 3,188,786 - ABZR86_RS14315 0.48 -0.8 3,188,857 + ABZR86_RS14315 0.54 -0.0 3,188,857 + ABZR86_RS14315 0.54 -0.1 3,188,932 + ABZR86_RS14315 0.61 -0.2 3,188,933 - ABZR86_RS14315 0.61 -0.5 3,188,933 - ABZR86_RS14315 0.61 -0.2 3,188,935 + ABZR86_RS14315 0.61 +0.4 3,189,261 + ABZR86_RS14315 0.89 -0.2 3,189,261 + ABZR86_RS14315 0.89 -1.2 3,189,261 + ABZR86_RS14315 0.89 +0.6 3,189,262 - ABZR86_RS14315 0.89 +0.8 3,189,287 - -0.2 3,189,287 - +0.1 3,189,289 + -0.7 3,189,289 + +0.4 3,189,290 - +0.2 3,189,486 + +0.6 3,189,486 + -0.4 3,189,486 + -0.8 3,189,487 - -0.2 3,189,487 - -1.1 3,189,496 - -1.0 3,189,556 + -0.1 3,189,556 + +0.1 3,189,557 - -0.4 3,189,582 + -0.1 3,189,582 + +0.4 3,189,583 - -0.0 3,189,583 - +0.8 3,189,583 - -0.8 3,189,796 + +0.1 3,189,796 + +0.8 3,189,796 + +0.5 3,189,796 + +0.2 3,189,796 + -0.3 3,189,797 - +0.1 3,189,797 - -0.5 3,189,797 - -0.0 3,189,797 - -0.3 3,189,797 - -0.9 3,189,797 - -0.4 3,189,797 - -0.5 3,189,964 + ABZR86_RS14320 0.40 -0.2 3,189,964 + ABZR86_RS14320 0.40 +0.3 3,190,029 + ABZR86_RS14320 0.55 +0.1 3,190,029 + ABZR86_RS14320 0.55 -0.7 3,190,054 + ABZR86_RS14320 0.60 -0.9 3,190,300 - +0.8 3,190,742 - ABZR86_RS14325 0.41 +0.5 3,190,774 + ABZR86_RS14325 0.45 -0.0 3,190,774 + ABZR86_RS14325 0.45 +0.5 3,190,774 + ABZR86_RS14325 0.45 +0.2 3,190,774 + ABZR86_RS14325 0.45 -0.1 3,190,774 + ABZR86_RS14325 0.45 +0.1 3,190,774 + ABZR86_RS14325 0.45 -0.1 3,190,775 - ABZR86_RS14325 0.45 -0.1 3,190,775 - ABZR86_RS14325 0.45 +0.2 3,190,775 - ABZR86_RS14325 0.45 +0.4 3,190,775 - ABZR86_RS14325 0.45 +0.6 3,190,775 - ABZR86_RS14325 0.45 -0.6 3,190,775 - ABZR86_RS14325 0.45 +0.4 3,190,775 - ABZR86_RS14325 0.45 -0.5 3,190,775 - ABZR86_RS14325 0.45 +0.0 3,190,775 - ABZR86_RS14325 0.45 +0.3 3,190,807 + ABZR86_RS14325 0.49 +0.7 3,190,807 + ABZR86_RS14325 0.49 -0.2 3,190,807 + ABZR86_RS14325 0.49 -1.7 3,190,807 + ABZR86_RS14325 0.49 -0.9 3,190,807 + ABZR86_RS14325 0.49 -0.2 3,190,808 - ABZR86_RS14325 0.49 -0.1 3,190,808 - ABZR86_RS14325 0.49 +0.5 3,190,996 + ABZR86_RS14325 0.70 +0.3 3,190,996 + ABZR86_RS14325 0.70 +0.6 3,190,996 + ABZR86_RS14325 0.70 -0.2 3,190,996 + ABZR86_RS14325 0.70 +0.3 3,190,996 + ABZR86_RS14325 0.70 -0.6 3,190,996 + ABZR86_RS14325 0.70 -0.1 3,190,997 - ABZR86_RS14325 0.70 -0.2 3,190,997 - ABZR86_RS14325 0.70 +0.5 3,191,032 + ABZR86_RS14325 0.74 -0.2 3,191,125 + ABZR86_RS14325 0.85 +0.1 3,191,191 + -0.3 3,191,192 - +1.1 3,191,192 - +0.6 3,191,192 - -1.4 3,191,192 - +0.0 3,191,192 - -0.0
Or see this region's nucleotide sequence