Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS09295

Experiment: Nalidixic 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS09290 and ABZR86_RS09295 are separated by 78 nucleotidesABZR86_RS09295 and ABZR86_RS09300 are separated by 349 nucleotides ABZR86_RS09290: ABZR86_RS09290 - M28 family peptidase, at 2,069,499 to 2,071,145 _RS09290 ABZR86_RS09295: ABZR86_RS09295 - nucleoside-diphosphate sugar epimerase, at 2,071,224 to 2,071,868 _RS09295 ABZR86_RS09300: ABZR86_RS09300 - C40 family peptidase, at 2,072,218 to 2,072,850 _RS09300 Position (kb) 2071 2072Strain fitness (log2 ratio) -2 -1 0 1 2at 2070.459 kb on + strand, within ABZR86_RS09290at 2070.459 kb on + strand, within ABZR86_RS09290at 2070.459 kb on + strand, within ABZR86_RS09290at 2070.460 kb on - strand, within ABZR86_RS09290at 2070.460 kb on - strand, within ABZR86_RS09290at 2070.460 kb on - strand, within ABZR86_RS09290at 2070.460 kb on - strand, within ABZR86_RS09290at 2070.651 kb on + strand, within ABZR86_RS09290at 2070.652 kb on - strand, within ABZR86_RS09290at 2070.753 kb on + strand, within ABZR86_RS09290at 2070.777 kb on + strand, within ABZR86_RS09290at 2070.778 kb on - strand, within ABZR86_RS09290at 2070.897 kb on + strand, within ABZR86_RS09290at 2070.898 kb on - strand, within ABZR86_RS09290at 2070.963 kb on + strand, within ABZR86_RS09290at 2070.963 kb on + strand, within ABZR86_RS09290at 2070.964 kb on - strand, within ABZR86_RS09290at 2071.087 kb on - strandat 2071.087 kb on - strandat 2071.144 kb on - strandat 2071.166 kb on - strandat 2071.596 kb on + strand, within ABZR86_RS09295at 2071.597 kb on - strand, within ABZR86_RS09295at 2071.597 kb on - strand, within ABZR86_RS09295at 2071.866 kb on + strandat 2071.866 kb on + strandat 2071.866 kb on + strandat 2071.866 kb on + strandat 2071.988 kb on - strandat 2071.994 kb on + strandat 2072.082 kb on + strandat 2072.349 kb on + strand, within ABZR86_RS09300at 2072.351 kb on + strand, within ABZR86_RS09300at 2072.351 kb on + strand, within ABZR86_RS09300at 2072.351 kb on + strand, within ABZR86_RS09300at 2072.351 kb on + strand, within ABZR86_RS09300at 2072.351 kb on + strand, within ABZR86_RS09300at 2072.351 kb on + strand, within ABZR86_RS09300at 2072.351 kb on + strand, within ABZR86_RS09300at 2072.351 kb on + strand, within ABZR86_RS09300at 2072.351 kb on + strand, within ABZR86_RS09300at 2072.351 kb on + strand, within ABZR86_RS09300at 2072.352 kb on - strand, within ABZR86_RS09300at 2072.352 kb on - strand, within ABZR86_RS09300at 2072.352 kb on - strand, within ABZR86_RS09300at 2072.352 kb on - strand, within ABZR86_RS09300at 2072.352 kb on - strand, within ABZR86_RS09300at 2072.352 kb on - strand, within ABZR86_RS09300at 2072.352 kb on - strand, within ABZR86_RS09300at 2072.352 kb on - strand, within ABZR86_RS09300at 2072.352 kb on - strand, within ABZR86_RS09300at 2072.352 kb on - strand, within ABZR86_RS09300at 2072.352 kb on - strand, within ABZR86_RS09300at 2072.352 kb on - strand, within ABZR86_RS09300at 2072.352 kb on - strand, within ABZR86_RS09300at 2072.352 kb on - strand, within ABZR86_RS09300at 2072.352 kb on - strand, within ABZR86_RS09300at 2072.352 kb on - strand, within ABZR86_RS09300at 2072.352 kb on - strand, within ABZR86_RS09300at 2072.352 kb on - strand, within ABZR86_RS09300at 2072.352 kb on - strand, within ABZR86_RS09300at 2072.352 kb on - strand, within ABZR86_RS09300at 2072.352 kb on - strand, within ABZR86_RS09300at 2072.352 kb on - strand, within ABZR86_RS09300at 2072.352 kb on - strand, within ABZR86_RS09300at 2072.355 kb on + strand, within ABZR86_RS09300at 2072.355 kb on + strand, within ABZR86_RS09300at 2072.355 kb on + strand, within ABZR86_RS09300at 2072.355 kb on + strand, within ABZR86_RS09300at 2072.355 kb on + strand, within ABZR86_RS09300at 2072.356 kb on - strand, within ABZR86_RS09300at 2072.516 kb on + strand, within ABZR86_RS09300at 2072.516 kb on + strand, within ABZR86_RS09300at 2072.516 kb on + strand, within ABZR86_RS09300at 2072.517 kb on - strand, within ABZR86_RS09300at 2072.517 kb on - strand, within ABZR86_RS09300at 2072.517 kb on - strand, within ABZR86_RS09300at 2072.517 kb on - strand, within ABZR86_RS09300at 2072.517 kb on - strand, within ABZR86_RS09300at 2072.517 kb on - strand, within ABZR86_RS09300at 2072.573 kb on + strand, within ABZR86_RS09300at 2072.573 kb on + strand, within ABZR86_RS09300at 2072.573 kb on + strand, within ABZR86_RS09300at 2072.573 kb on + strand, within ABZR86_RS09300at 2072.574 kb on - strand, within ABZR86_RS09300

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.02 mg/ml
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2,070,459 + ABZR86_RS09290 0.58 -0.1
2,070,459 + ABZR86_RS09290 0.58 -0.2
2,070,459 + ABZR86_RS09290 0.58 -0.2
2,070,460 - ABZR86_RS09290 0.58 +0.4
2,070,460 - ABZR86_RS09290 0.58 +0.1
2,070,460 - ABZR86_RS09290 0.58 -0.0
2,070,460 - ABZR86_RS09290 0.58 -0.2
2,070,651 + ABZR86_RS09290 0.70 -0.0
2,070,652 - ABZR86_RS09290 0.70 +0.3
2,070,753 + ABZR86_RS09290 0.76 +0.3
2,070,777 + ABZR86_RS09290 0.78 -2.4
2,070,778 - ABZR86_RS09290 0.78 -0.2
2,070,897 + ABZR86_RS09290 0.85 -0.4
2,070,898 - ABZR86_RS09290 0.85 -0.8
2,070,963 + ABZR86_RS09290 0.89 -0.1
2,070,963 + ABZR86_RS09290 0.89 -0.7
2,070,964 - ABZR86_RS09290 0.89 -1.5
2,071,087 - +0.3
2,071,087 - -1.2
2,071,144 - -0.6
2,071,166 - +0.4
2,071,596 + ABZR86_RS09295 0.58 +0.1
2,071,597 - ABZR86_RS09295 0.58 -0.5
2,071,597 - ABZR86_RS09295 0.58 +1.3
2,071,866 + +0.1
2,071,866 + +0.1
2,071,866 + +0.1
2,071,866 + +0.0
2,071,988 - -0.5
2,071,994 + +0.0
2,072,082 + -0.6
2,072,349 + ABZR86_RS09300 0.21 +0.2
2,072,351 + ABZR86_RS09300 0.21 +1.3
2,072,351 + ABZR86_RS09300 0.21 -0.3
2,072,351 + ABZR86_RS09300 0.21 +0.9
2,072,351 + ABZR86_RS09300 0.21 +0.1
2,072,351 + ABZR86_RS09300 0.21 +0.9
2,072,351 + ABZR86_RS09300 0.21 +0.7
2,072,351 + ABZR86_RS09300 0.21 +0.9
2,072,351 + ABZR86_RS09300 0.21 +1.5
2,072,351 + ABZR86_RS09300 0.21 +1.3
2,072,351 + ABZR86_RS09300 0.21 +0.5
2,072,352 - ABZR86_RS09300 0.21 +1.2
2,072,352 - ABZR86_RS09300 0.21 +0.8
2,072,352 - ABZR86_RS09300 0.21 +1.4
2,072,352 - ABZR86_RS09300 0.21 +1.2
2,072,352 - ABZR86_RS09300 0.21 +1.2
2,072,352 - ABZR86_RS09300 0.21 +2.1
2,072,352 - ABZR86_RS09300 0.21 +1.6
2,072,352 - ABZR86_RS09300 0.21 +0.7
2,072,352 - ABZR86_RS09300 0.21 +1.2
2,072,352 - ABZR86_RS09300 0.21 +1.3
2,072,352 - ABZR86_RS09300 0.21 +2.0
2,072,352 - ABZR86_RS09300 0.21 +0.7
2,072,352 - ABZR86_RS09300 0.21 +0.2
2,072,352 - ABZR86_RS09300 0.21 +1.0
2,072,352 - ABZR86_RS09300 0.21 +1.2
2,072,352 - ABZR86_RS09300 0.21 +0.2
2,072,352 - ABZR86_RS09300 0.21 +0.8
2,072,352 - ABZR86_RS09300 0.21 +1.2
2,072,352 - ABZR86_RS09300 0.21 -0.7
2,072,352 - ABZR86_RS09300 0.21 +2.3
2,072,352 - ABZR86_RS09300 0.21 +1.0
2,072,352 - ABZR86_RS09300 0.21 +0.7
2,072,352 - ABZR86_RS09300 0.21 +0.9
2,072,355 + ABZR86_RS09300 0.22 +1.0
2,072,355 + ABZR86_RS09300 0.22 +0.7
2,072,355 + ABZR86_RS09300 0.22 +0.7
2,072,355 + ABZR86_RS09300 0.22 -0.4
2,072,355 + ABZR86_RS09300 0.22 +1.7
2,072,356 - ABZR86_RS09300 0.22 +1.6
2,072,516 + ABZR86_RS09300 0.47 +0.5
2,072,516 + ABZR86_RS09300 0.47 +1.2
2,072,516 + ABZR86_RS09300 0.47 +1.2
2,072,517 - ABZR86_RS09300 0.47 +1.0
2,072,517 - ABZR86_RS09300 0.47 +2.2
2,072,517 - ABZR86_RS09300 0.47 +1.2
2,072,517 - ABZR86_RS09300 0.47 +0.8
2,072,517 - ABZR86_RS09300 0.47 +1.0
2,072,517 - ABZR86_RS09300 0.47 +1.0
2,072,573 + ABZR86_RS09300 0.56 +0.6
2,072,573 + ABZR86_RS09300 0.56 +0.7
2,072,573 + ABZR86_RS09300 0.56 +1.4
2,072,573 + ABZR86_RS09300 0.56 +0.9
2,072,574 - ABZR86_RS09300 0.56 +0.7

Or see this region's nucleotide sequence