Experiment: Nalidixic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS04045 and ABZR86_RS04050 are separated by 146 nucleotides ABZR86_RS04050 and ABZR86_RS04055 are separated by 121 nucleotides
ABZR86_RS04045: ABZR86_RS04045 - sialidase family protein, at 890,245 to 891,276
_RS04045
ABZR86_RS04050: ABZR86_RS04050 - DMT family transporter, at 891,423 to 892,286
_RS04050
ABZR86_RS04055: ABZR86_RS04055 - PLP-dependent aminotransferase family protein, at 892,408 to 893,799
_RS04055
Position (kb) 891
892
893 Strain fitness (log2 ratio) -2
-1
0
1 at 890.446 kb on + strand, within ABZR86_RS04045 at 890.495 kb on + strand, within ABZR86_RS04045 at 890.495 kb on + strand, within ABZR86_RS04045 at 890.955 kb on - strand, within ABZR86_RS04045 at 891.097 kb on + strand, within ABZR86_RS04045 at 891.396 kb on + strand at 891.397 kb on - strand at 891.424 kb on + strand at 891.433 kb on + strand at 891.434 kb on - strand at 891.434 kb on - strand at 891.434 kb on - strand at 891.477 kb on + strand at 891.478 kb on - strand at 891.478 kb on - strand at 891.575 kb on + strand, within ABZR86_RS04050 at 891.575 kb on + strand, within ABZR86_RS04050 at 891.640 kb on + strand, within ABZR86_RS04050 at 891.640 kb on + strand, within ABZR86_RS04050 at 891.640 kb on + strand, within ABZR86_RS04050 at 891.640 kb on + strand, within ABZR86_RS04050 at 891.641 kb on - strand, within ABZR86_RS04050 at 891.641 kb on - strand, within ABZR86_RS04050 at 891.877 kb on + strand, within ABZR86_RS04050 at 891.877 kb on + strand, within ABZR86_RS04050 at 891.878 kb on - strand, within ABZR86_RS04050 at 891.968 kb on + strand, within ABZR86_RS04050 at 891.968 kb on + strand, within ABZR86_RS04050 at 891.969 kb on - strand, within ABZR86_RS04050 at 892.251 kb on - strand at 892.376 kb on - strand at 892.477 kb on + strand at 892.478 kb on - strand at 892.558 kb on + strand, within ABZR86_RS04055 at 892.559 kb on - strand, within ABZR86_RS04055 at 892.559 kb on - strand, within ABZR86_RS04055 at 892.612 kb on + strand, within ABZR86_RS04055 at 892.612 kb on + strand, within ABZR86_RS04055 at 892.612 kb on + strand, within ABZR86_RS04055 at 892.612 kb on + strand, within ABZR86_RS04055 at 892.612 kb on + strand, within ABZR86_RS04055 at 892.613 kb on - strand, within ABZR86_RS04055 at 892.724 kb on + strand, within ABZR86_RS04055 at 892.724 kb on + strand, within ABZR86_RS04055 at 892.725 kb on - strand, within ABZR86_RS04055 at 892.765 kb on + strand, within ABZR86_RS04055 at 892.765 kb on + strand, within ABZR86_RS04055 at 892.765 kb on + strand, within ABZR86_RS04055 at 892.765 kb on + strand, within ABZR86_RS04055 at 892.831 kb on + strand, within ABZR86_RS04055 at 892.832 kb on - strand, within ABZR86_RS04055 at 892.867 kb on + strand, within ABZR86_RS04055 at 892.867 kb on + strand, within ABZR86_RS04055 at 892.867 kb on + strand, within ABZR86_RS04055 at 893.089 kb on - strand, within ABZR86_RS04055 at 893.134 kb on + strand, within ABZR86_RS04055 at 893.134 kb on + strand, within ABZR86_RS04055 at 893.135 kb on - strand, within ABZR86_RS04055
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.02 mg/ml remove 890,446 + ABZR86_RS04045 0.19 +0.3 890,495 + ABZR86_RS04045 0.24 -0.8 890,495 + ABZR86_RS04045 0.24 +0.1 890,955 - ABZR86_RS04045 0.69 -0.2 891,097 + ABZR86_RS04045 0.83 -0.5 891,396 + +0.0 891,397 - +0.2 891,424 + -0.5 891,433 + +0.4 891,434 - -0.7 891,434 - +0.3 891,434 - -0.2 891,477 + -0.2 891,478 - +0.0 891,478 - -1.9 891,575 + ABZR86_RS04050 0.18 -0.1 891,575 + ABZR86_RS04050 0.18 -0.7 891,640 + ABZR86_RS04050 0.25 +0.3 891,640 + ABZR86_RS04050 0.25 -0.3 891,640 + ABZR86_RS04050 0.25 +0.8 891,640 + ABZR86_RS04050 0.25 -0.8 891,641 - ABZR86_RS04050 0.25 -0.2 891,641 - ABZR86_RS04050 0.25 +1.2 891,877 + ABZR86_RS04050 0.53 -0.7 891,877 + ABZR86_RS04050 0.53 -1.6 891,878 - ABZR86_RS04050 0.53 +0.3 891,968 + ABZR86_RS04050 0.63 -0.5 891,968 + ABZR86_RS04050 0.63 -1.0 891,969 - ABZR86_RS04050 0.63 -0.5 892,251 - +0.7 892,376 - -0.8 892,477 + -0.6 892,478 - +0.3 892,558 + ABZR86_RS04055 0.11 -0.6 892,559 - ABZR86_RS04055 0.11 -0.5 892,559 - ABZR86_RS04055 0.11 -0.2 892,612 + ABZR86_RS04055 0.15 -0.1 892,612 + ABZR86_RS04055 0.15 -0.1 892,612 + ABZR86_RS04055 0.15 +0.1 892,612 + ABZR86_RS04055 0.15 -0.4 892,612 + ABZR86_RS04055 0.15 -0.2 892,613 - ABZR86_RS04055 0.15 -2.0 892,724 + ABZR86_RS04055 0.23 +0.0 892,724 + ABZR86_RS04055 0.23 -0.0 892,725 - ABZR86_RS04055 0.23 -0.5 892,765 + ABZR86_RS04055 0.26 +0.0 892,765 + ABZR86_RS04055 0.26 +1.3 892,765 + ABZR86_RS04055 0.26 +0.5 892,765 + ABZR86_RS04055 0.26 -0.3 892,831 + ABZR86_RS04055 0.30 +0.4 892,832 - ABZR86_RS04055 0.30 -0.6 892,867 + ABZR86_RS04055 0.33 -0.9 892,867 + ABZR86_RS04055 0.33 -0.4 892,867 + ABZR86_RS04055 0.33 -0.3 893,089 - ABZR86_RS04055 0.49 -0.8 893,134 + ABZR86_RS04055 0.52 -0.5 893,134 + ABZR86_RS04055 0.52 -0.9 893,135 - ABZR86_RS04055 0.52 +0.9
Or see this region's nucleotide sequence