Experiment: Nalidixic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS04035 and ABZR86_RS04040 are separated by 228 nucleotides ABZR86_RS04040 and ABZR86_RS04045 are separated by 60 nucleotides
ABZR86_RS04035: ABZR86_RS04035 - LysR substrate-binding domain-containing protein, at 888,511 to 889,425
_RS04035
ABZR86_RS04040: ABZR86_RS04040 - heme-binding protein, at 889,654 to 890,184
_RS04040
ABZR86_RS04045: ABZR86_RS04045 - sialidase family protein, at 890,245 to 891,276
_RS04045
Position (kb) 889
890
891 Strain fitness (log2 ratio) -1
0
1 at 888.839 kb on + strand, within ABZR86_RS04035 at 888.856 kb on + strand, within ABZR86_RS04035 at 888.856 kb on + strand, within ABZR86_RS04035 at 888.856 kb on + strand, within ABZR86_RS04035 at 888.856 kb on + strand, within ABZR86_RS04035 at 888.856 kb on + strand, within ABZR86_RS04035 at 888.857 kb on - strand, within ABZR86_RS04035 at 888.857 kb on - strand, within ABZR86_RS04035 at 889.032 kb on + strand, within ABZR86_RS04035 at 889.232 kb on + strand, within ABZR86_RS04035 at 889.233 kb on - strand, within ABZR86_RS04035 at 889.233 kb on - strand, within ABZR86_RS04035 at 889.233 kb on - strand, within ABZR86_RS04035 at 889.458 kb on + strand at 889.459 kb on - strand at 889.459 kb on - strand at 889.459 kb on - strand at 889.461 kb on - strand at 889.461 kb on - strand at 889.541 kb on + strand at 889.542 kb on - strand at 889.542 kb on - strand at 889.542 kb on - strand at 889.545 kb on + strand at 889.608 kb on - strand at 889.750 kb on + strand, within ABZR86_RS04040 at 889.893 kb on - strand, within ABZR86_RS04040 at 889.924 kb on + strand, within ABZR86_RS04040 at 889.925 kb on - strand, within ABZR86_RS04040 at 889.996 kb on + strand, within ABZR86_RS04040 at 889.996 kb on + strand, within ABZR86_RS04040 at 889.996 kb on + strand, within ABZR86_RS04040 at 890.058 kb on + strand, within ABZR86_RS04040 at 890.059 kb on - strand, within ABZR86_RS04040 at 890.135 kb on + strand at 890.135 kb on + strand at 890.135 kb on + strand at 890.135 kb on + strand at 890.136 kb on - strand at 890.136 kb on - strand at 890.136 kb on - strand at 890.136 kb on - strand at 890.179 kb on + strand at 890.180 kb on - strand at 890.182 kb on + strand at 890.182 kb on + strand at 890.183 kb on - strand at 890.183 kb on - strand at 890.187 kb on - strand at 890.190 kb on - strand at 890.190 kb on - strand at 890.190 kb on - strand at 890.190 kb on - strand at 890.292 kb on + strand at 890.292 kb on + strand at 890.293 kb on - strand at 890.319 kb on + strand at 890.319 kb on + strand at 890.319 kb on + strand at 890.319 kb on + strand at 890.319 kb on + strand at 890.320 kb on - strand at 890.321 kb on + strand at 890.321 kb on + strand at 890.322 kb on - strand at 890.322 kb on - strand at 890.446 kb on + strand, within ABZR86_RS04045 at 890.495 kb on + strand, within ABZR86_RS04045 at 890.495 kb on + strand, within ABZR86_RS04045 at 890.955 kb on - strand, within ABZR86_RS04045 at 891.097 kb on + strand, within ABZR86_RS04045
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.02 mg/ml remove 888,839 + ABZR86_RS04035 0.36 +0.4 888,856 + ABZR86_RS04035 0.38 -0.6 888,856 + ABZR86_RS04035 0.38 +0.3 888,856 + ABZR86_RS04035 0.38 +0.7 888,856 + ABZR86_RS04035 0.38 +0.8 888,856 + ABZR86_RS04035 0.38 -0.3 888,857 - ABZR86_RS04035 0.38 -0.8 888,857 - ABZR86_RS04035 0.38 +0.2 889,032 + ABZR86_RS04035 0.57 +0.5 889,232 + ABZR86_RS04035 0.79 +0.1 889,233 - ABZR86_RS04035 0.79 +0.0 889,233 - ABZR86_RS04035 0.79 +0.6 889,233 - ABZR86_RS04035 0.79 -0.2 889,458 + +0.4 889,459 - +0.4 889,459 - +0.5 889,459 - +0.0 889,461 - -0.4 889,461 - -0.7 889,541 + -0.1 889,542 - -0.6 889,542 - +0.0 889,542 - -0.2 889,545 + +0.1 889,608 - +0.4 889,750 + ABZR86_RS04040 0.18 -0.4 889,893 - ABZR86_RS04040 0.45 +0.8 889,924 + ABZR86_RS04040 0.51 -0.2 889,925 - ABZR86_RS04040 0.51 +0.1 889,996 + ABZR86_RS04040 0.64 +0.4 889,996 + ABZR86_RS04040 0.64 -0.1 889,996 + ABZR86_RS04040 0.64 -0.0 890,058 + ABZR86_RS04040 0.76 -1.0 890,059 - ABZR86_RS04040 0.76 +0.1 890,135 + -0.7 890,135 + +1.5 890,135 + -0.2 890,135 + -0.4 890,136 - -0.2 890,136 - +0.0 890,136 - +0.3 890,136 - +0.4 890,179 + +1.1 890,180 - -0.8 890,182 + +0.8 890,182 + +1.2 890,183 - -0.3 890,183 - +0.2 890,187 - +0.2 890,190 - -0.3 890,190 - -0.1 890,190 - -0.4 890,190 - -0.2 890,292 + -0.1 890,292 + -0.7 890,293 - -0.4 890,319 + -1.1 890,319 + +0.5 890,319 + -1.0 890,319 + +0.1 890,319 + +0.2 890,320 - -0.1 890,321 + +0.1 890,321 + +0.6 890,322 - -0.3 890,322 - -1.0 890,446 + ABZR86_RS04045 0.19 +0.3 890,495 + ABZR86_RS04045 0.24 -0.8 890,495 + ABZR86_RS04045 0.24 +0.1 890,955 - ABZR86_RS04045 0.69 -0.2 891,097 + ABZR86_RS04045 0.83 -0.5
Or see this region's nucleotide sequence