Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS02700

Experiment: Nalidixic 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS02690 and ABZR86_RS02695 are separated by 84 nucleotidesABZR86_RS02695 and ABZR86_RS02700 are separated by 57 nucleotidesABZR86_RS02700 and ABZR86_RS02705 are separated by 40 nucleotides ABZR86_RS02690: ABZR86_RS02690 - hypothetical protein, at 543,673 to 544,320 _RS02690 ABZR86_RS02695: ABZR86_RS02695 - hypothetical protein, at 544,405 to 544,623 _RS02695 ABZR86_RS02700: ABZR86_RS02700 - hypothetical protein, at 544,681 to 545,136 _RS02700 ABZR86_RS02705: ABZR86_RS02705 - SOS response-associated peptidase family protein, at 545,177 to 546,112 _RS02705 Position (kb) 544 545 546Strain fitness (log2 ratio) -1 0 1 2at 543.690 kb on + strandat 543.690 kb on + strandat 543.690 kb on + strandat 543.697 kb on + strandat 543.697 kb on + strandat 543.698 kb on - strandat 543.698 kb on - strandat 543.733 kb on + strandat 543.733 kb on + strandat 543.733 kb on + strandat 543.733 kb on + strandat 543.734 kb on - strandat 543.734 kb on - strandat 543.788 kb on - strand, within ABZR86_RS02690at 543.806 kb on - strand, within ABZR86_RS02690at 543.868 kb on + strand, within ABZR86_RS02690at 543.868 kb on + strand, within ABZR86_RS02690at 543.869 kb on - strand, within ABZR86_RS02690at 543.869 kb on - strand, within ABZR86_RS02690at 543.889 kb on + strand, within ABZR86_RS02690at 543.890 kb on - strand, within ABZR86_RS02690at 543.890 kb on - strand, within ABZR86_RS02690at 543.915 kb on + strand, within ABZR86_RS02690at 543.915 kb on + strand, within ABZR86_RS02690at 543.915 kb on + strand, within ABZR86_RS02690at 543.915 kb on + strand, within ABZR86_RS02690at 543.916 kb on - strand, within ABZR86_RS02690at 543.952 kb on + strand, within ABZR86_RS02690at 543.953 kb on - strand, within ABZR86_RS02690at 543.953 kb on - strand, within ABZR86_RS02690at 543.953 kb on - strand, within ABZR86_RS02690at 543.955 kb on + strand, within ABZR86_RS02690at 543.955 kb on + strand, within ABZR86_RS02690at 543.955 kb on + strand, within ABZR86_RS02690at 543.955 kb on + strand, within ABZR86_RS02690at 543.955 kb on + strand, within ABZR86_RS02690at 543.955 kb on + strand, within ABZR86_RS02690at 543.955 kb on + strand, within ABZR86_RS02690at 543.956 kb on - strand, within ABZR86_RS02690at 543.956 kb on - strand, within ABZR86_RS02690at 544.095 kb on + strand, within ABZR86_RS02690at 544.095 kb on + strand, within ABZR86_RS02690at 544.096 kb on - strand, within ABZR86_RS02690at 544.123 kb on + strand, within ABZR86_RS02690at 544.123 kb on + strand, within ABZR86_RS02690at 544.124 kb on - strand, within ABZR86_RS02690at 544.124 kb on - strand, within ABZR86_RS02690at 544.283 kb on + strandat 544.283 kb on + strandat 544.283 kb on + strandat 544.283 kb on + strandat 544.284 kb on - strandat 544.284 kb on - strandat 544.318 kb on + strandat 544.319 kb on - strandat 544.319 kb on - strandat 544.352 kb on - strandat 544.352 kb on - strandat 544.352 kb on - strandat 544.483 kb on + strand, within ABZR86_RS02695at 544.483 kb on + strand, within ABZR86_RS02695at 544.484 kb on - strand, within ABZR86_RS02695at 544.484 kb on - strand, within ABZR86_RS02695at 544.484 kb on - strand, within ABZR86_RS02695at 544.484 kb on - strand, within ABZR86_RS02695at 544.565 kb on + strand, within ABZR86_RS02695at 544.566 kb on - strand, within ABZR86_RS02695at 544.597 kb on + strand, within ABZR86_RS02695at 544.598 kb on - strand, within ABZR86_RS02695at 544.598 kb on - strand, within ABZR86_RS02695at 544.598 kb on - strand, within ABZR86_RS02695at 544.621 kb on + strandat 544.670 kb on - strandat 544.716 kb on - strandat 544.829 kb on + strand, within ABZR86_RS02700at 544.829 kb on + strand, within ABZR86_RS02700at 544.870 kb on - strand, within ABZR86_RS02700at 544.870 kb on - strand, within ABZR86_RS02700at 544.870 kb on - strand, within ABZR86_RS02700at 545.128 kb on + strandat 545.128 kb on + strandat 545.129 kb on - strandat 545.129 kb on - strandat 545.144 kb on + strandat 545.144 kb on + strandat 545.144 kb on + strandat 545.145 kb on - strandat 545.145 kb on - strandat 545.145 kb on - strandat 545.145 kb on - strandat 545.145 kb on - strandat 545.145 kb on - strandat 545.183 kb on + strandat 545.183 kb on + strandat 545.183 kb on + strandat 545.183 kb on + strandat 545.184 kb on - strandat 545.184 kb on - strandat 545.184 kb on - strandat 545.184 kb on - strandat 545.208 kb on - strandat 545.208 kb on - strandat 545.261 kb on - strandat 545.660 kb on + strand, within ABZR86_RS02705at 545.661 kb on - strand, within ABZR86_RS02705at 545.705 kb on + strand, within ABZR86_RS02705at 545.705 kb on + strand, within ABZR86_RS02705at 545.705 kb on + strand, within ABZR86_RS02705at 545.705 kb on + strand, within ABZR86_RS02705at 545.717 kb on + strand, within ABZR86_RS02705at 545.717 kb on + strand, within ABZR86_RS02705at 545.717 kb on + strand, within ABZR86_RS02705at 545.717 kb on + strand, within ABZR86_RS02705at 545.718 kb on - strand, within ABZR86_RS02705at 545.718 kb on - strand, within ABZR86_RS02705at 545.718 kb on - strand, within ABZR86_RS02705at 545.718 kb on - strand, within ABZR86_RS02705at 545.718 kb on - strand, within ABZR86_RS02705at 545.718 kb on - strand, within ABZR86_RS02705at 545.718 kb on - strand, within ABZR86_RS02705at 545.718 kb on - strand, within ABZR86_RS02705at 545.718 kb on - strand, within ABZR86_RS02705at 545.718 kb on - strand, within ABZR86_RS02705at 545.718 kb on - strand, within ABZR86_RS02705at 545.718 kb on - strand, within ABZR86_RS02705at 545.794 kb on + strand, within ABZR86_RS02705at 545.794 kb on + strand, within ABZR86_RS02705at 545.794 kb on + strand, within ABZR86_RS02705at 545.795 kb on - strand, within ABZR86_RS02705at 545.795 kb on - strand, within ABZR86_RS02705at 545.795 kb on - strand, within ABZR86_RS02705at 545.795 kb on - strand, within ABZR86_RS02705at 545.795 kb on - strand, within ABZR86_RS02705at 545.795 kb on - strand, within ABZR86_RS02705at 545.795 kb on - strand, within ABZR86_RS02705at 545.795 kb on - strand, within ABZR86_RS02705at 545.795 kb on - strand, within ABZR86_RS02705at 545.795 kb on - strand, within ABZR86_RS02705at 545.795 kb on - strand, within ABZR86_RS02705at 545.801 kb on + strand, within ABZR86_RS02705at 545.801 kb on + strand, within ABZR86_RS02705at 545.802 kb on - strand, within ABZR86_RS02705at 545.802 kb on - strand, within ABZR86_RS02705at 546.056 kb on + strandat 546.057 kb on - strandat 546.086 kb on + strandat 546.087 kb on - strandat 546.087 kb on - strandat 546.089 kb on + strandat 546.089 kb on + strandat 546.089 kb on + strandat 546.089 kb on + strandat 546.090 kb on - strandat 546.090 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.02 mg/ml
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543,690 + -0.3
543,690 + -0.5
543,690 + +0.0
543,697 + +0.2
543,697 + -0.2
543,698 - +0.2
543,698 - -0.7
543,733 + -0.0
543,733 + -0.5
543,733 + -0.2
543,733 + -0.5
543,734 - -0.4
543,734 - +0.2
543,788 - ABZR86_RS02690 0.18 -0.2
543,806 - ABZR86_RS02690 0.21 -0.2
543,868 + ABZR86_RS02690 0.30 +0.1
543,868 + ABZR86_RS02690 0.30 -0.0
543,869 - ABZR86_RS02690 0.30 +0.1
543,869 - ABZR86_RS02690 0.30 -0.7
543,889 + ABZR86_RS02690 0.33 +0.7
543,890 - ABZR86_RS02690 0.33 -0.1
543,890 - ABZR86_RS02690 0.33 -0.8
543,915 + ABZR86_RS02690 0.37 +0.6
543,915 + ABZR86_RS02690 0.37 -0.4
543,915 + ABZR86_RS02690 0.37 +1.5
543,915 + ABZR86_RS02690 0.37 +0.0
543,916 - ABZR86_RS02690 0.38 +0.4
543,952 + ABZR86_RS02690 0.43 -0.3
543,953 - ABZR86_RS02690 0.43 -0.4
543,953 - ABZR86_RS02690 0.43 -0.6
543,953 - ABZR86_RS02690 0.43 -0.4
543,955 + ABZR86_RS02690 0.44 +0.3
543,955 + ABZR86_RS02690 0.44 -0.2
543,955 + ABZR86_RS02690 0.44 -0.8
543,955 + ABZR86_RS02690 0.44 +0.3
543,955 + ABZR86_RS02690 0.44 -0.1
543,955 + ABZR86_RS02690 0.44 +0.3
543,955 + ABZR86_RS02690 0.44 +2.1
543,956 - ABZR86_RS02690 0.44 -0.1
543,956 - ABZR86_RS02690 0.44 -0.3
544,095 + ABZR86_RS02690 0.65 -0.3
544,095 + ABZR86_RS02690 0.65 -0.2
544,096 - ABZR86_RS02690 0.65 +0.6
544,123 + ABZR86_RS02690 0.69 -0.0
544,123 + ABZR86_RS02690 0.69 -0.1
544,124 - ABZR86_RS02690 0.70 +0.2
544,124 - ABZR86_RS02690 0.70 +0.7
544,283 + +0.7
544,283 + +0.0
544,283 + -0.3
544,283 + +0.7
544,284 - +1.2
544,284 - -0.2
544,318 + +0.4
544,319 - +0.3
544,319 - -0.2
544,352 - +0.4
544,352 - -0.5
544,352 - -0.3
544,483 + ABZR86_RS02695 0.36 -0.4
544,483 + ABZR86_RS02695 0.36 +0.5
544,484 - ABZR86_RS02695 0.36 +0.4
544,484 - ABZR86_RS02695 0.36 +0.5
544,484 - ABZR86_RS02695 0.36 +0.1
544,484 - ABZR86_RS02695 0.36 -0.5
544,565 + ABZR86_RS02695 0.73 -0.2
544,566 - ABZR86_RS02695 0.74 +0.1
544,597 + ABZR86_RS02695 0.88 +0.4
544,598 - ABZR86_RS02695 0.88 -0.1
544,598 - ABZR86_RS02695 0.88 -0.9
544,598 - ABZR86_RS02695 0.88 +0.8
544,621 + +0.1
544,670 - -0.9
544,716 - -0.0
544,829 + ABZR86_RS02700 0.32 -0.5
544,829 + ABZR86_RS02700 0.32 +0.3
544,870 - ABZR86_RS02700 0.41 +0.4
544,870 - ABZR86_RS02700 0.41 +0.2
544,870 - ABZR86_RS02700 0.41 +0.2
545,128 + +0.3
545,128 + +0.6
545,129 - +0.5
545,129 - -0.5
545,144 + -0.1
545,144 + -0.3
545,144 + -0.2
545,145 - +0.2
545,145 - +0.4
545,145 - +0.1
545,145 - -0.9
545,145 - -0.7
545,145 - +0.2
545,183 + -0.1
545,183 + -0.3
545,183 + +0.4
545,183 + +0.0
545,184 - +0.0
545,184 - -0.3
545,184 - +0.3
545,184 - +0.4
545,208 - +0.2
545,208 - -0.7
545,261 - +0.4
545,660 + ABZR86_RS02705 0.52 -0.2
545,661 - ABZR86_RS02705 0.52 -0.1
545,705 + ABZR86_RS02705 0.56 -0.1
545,705 + ABZR86_RS02705 0.56 +0.4
545,705 + ABZR86_RS02705 0.56 +0.4
545,705 + ABZR86_RS02705 0.56 -0.1
545,717 + ABZR86_RS02705 0.58 -0.5
545,717 + ABZR86_RS02705 0.58 +0.4
545,717 + ABZR86_RS02705 0.58 +0.2
545,717 + ABZR86_RS02705 0.58 +0.2
545,718 - ABZR86_RS02705 0.58 +1.3
545,718 - ABZR86_RS02705 0.58 +0.0
545,718 - ABZR86_RS02705 0.58 +0.7
545,718 - ABZR86_RS02705 0.58 +0.2
545,718 - ABZR86_RS02705 0.58 +0.4
545,718 - ABZR86_RS02705 0.58 +0.2
545,718 - ABZR86_RS02705 0.58 +0.0
545,718 - ABZR86_RS02705 0.58 +0.0
545,718 - ABZR86_RS02705 0.58 +0.3
545,718 - ABZR86_RS02705 0.58 -0.2
545,718 - ABZR86_RS02705 0.58 -0.1
545,718 - ABZR86_RS02705 0.58 +0.1
545,794 + ABZR86_RS02705 0.66 +1.3
545,794 + ABZR86_RS02705 0.66 -1.3
545,794 + ABZR86_RS02705 0.66 -0.7
545,795 - ABZR86_RS02705 0.66 -0.7
545,795 - ABZR86_RS02705 0.66 -0.1
545,795 - ABZR86_RS02705 0.66 +0.1
545,795 - ABZR86_RS02705 0.66 +0.4
545,795 - ABZR86_RS02705 0.66 -0.4
545,795 - ABZR86_RS02705 0.66 +0.2
545,795 - ABZR86_RS02705 0.66 -0.2
545,795 - ABZR86_RS02705 0.66 -0.9
545,795 - ABZR86_RS02705 0.66 -0.5
545,795 - ABZR86_RS02705 0.66 +0.9
545,795 - ABZR86_RS02705 0.66 -0.4
545,801 + ABZR86_RS02705 0.67 -0.6
545,801 + ABZR86_RS02705 0.67 +0.1
545,802 - ABZR86_RS02705 0.67 +0.1
545,802 - ABZR86_RS02705 0.67 +0.1
546,056 + -0.3
546,057 - -0.6
546,086 + +0.3
546,087 - +0.0
546,087 - -0.6
546,089 + +0.7
546,089 + +0.0
546,089 + +0.1
546,089 + -1.2
546,090 - +0.4
546,090 - -0.1

Or see this region's nucleotide sequence