Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS01105

Experiment: Nalidixic 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS01100 and ABZR86_RS01105 overlap by 1 nucleotidesABZR86_RS01105 and ABZR86_RS01110 are separated by 201 nucleotidesABZR86_RS01110 and ABZR86_RS01115 overlap by 23 nucleotides ABZR86_RS01100: ABZR86_RS01100 - catalase family peroxidase, at 219,814 to 220,902 _RS01100 ABZR86_RS01105: ABZR86_RS01105 - cytochrome b/b6 domain-containing protein, at 220,902 to 221,447 _RS01105 ABZR86_RS01110: ABZR86_RS01110 - hypothetical protein, at 221,649 to 222,344 _RS01110 ABZR86_RS01115: ABZR86_RS01115 - MASE1 domain-containing protein, at 222,322 to 223,872 _RS01115 Position (kb) 220 221 222Strain fitness (log2 ratio) -2 -1 0 1at 219.925 kb on + strand, within ABZR86_RS01100at 219.925 kb on + strand, within ABZR86_RS01100at 219.926 kb on - strand, within ABZR86_RS01100at 219.926 kb on - strand, within ABZR86_RS01100at 220.159 kb on + strand, within ABZR86_RS01100at 220.160 kb on - strand, within ABZR86_RS01100at 220.160 kb on - strand, within ABZR86_RS01100at 220.160 kb on - strand, within ABZR86_RS01100at 220.160 kb on - strand, within ABZR86_RS01100at 220.206 kb on + strand, within ABZR86_RS01100at 220.438 kb on + strand, within ABZR86_RS01100at 220.438 kb on + strand, within ABZR86_RS01100at 220.438 kb on + strand, within ABZR86_RS01100at 220.438 kb on + strand, within ABZR86_RS01100at 220.438 kb on + strand, within ABZR86_RS01100at 220.438 kb on + strand, within ABZR86_RS01100at 220.438 kb on + strand, within ABZR86_RS01100at 220.438 kb on + strand, within ABZR86_RS01100at 220.439 kb on - strand, within ABZR86_RS01100at 220.439 kb on - strand, within ABZR86_RS01100at 220.439 kb on - strand, within ABZR86_RS01100at 220.439 kb on - strand, within ABZR86_RS01100at 220.439 kb on - strand, within ABZR86_RS01100at 220.439 kb on - strand, within ABZR86_RS01100at 220.439 kb on - strand, within ABZR86_RS01100at 220.439 kb on - strand, within ABZR86_RS01100at 220.439 kb on - strand, within ABZR86_RS01100at 220.439 kb on - strand, within ABZR86_RS01100at 220.439 kb on - strand, within ABZR86_RS01100at 220.548 kb on + strand, within ABZR86_RS01100at 220.548 kb on + strand, within ABZR86_RS01100at 220.548 kb on + strand, within ABZR86_RS01100at 220.549 kb on - strand, within ABZR86_RS01100at 220.549 kb on - strand, within ABZR86_RS01100at 220.549 kb on - strand, within ABZR86_RS01100at 220.552 kb on + strand, within ABZR86_RS01100at 220.552 kb on + strand, within ABZR86_RS01100at 220.552 kb on + strand, within ABZR86_RS01100at 220.552 kb on + strand, within ABZR86_RS01100at 220.552 kb on + strand, within ABZR86_RS01100at 220.553 kb on - strand, within ABZR86_RS01100at 220.553 kb on - strand, within ABZR86_RS01100at 220.553 kb on - strand, within ABZR86_RS01100at 220.553 kb on - strand, within ABZR86_RS01100at 220.553 kb on - strand, within ABZR86_RS01100at 220.553 kb on - strand, within ABZR86_RS01100at 220.553 kb on - strand, within ABZR86_RS01100at 220.553 kb on - strand, within ABZR86_RS01100at 220.553 kb on - strand, within ABZR86_RS01100at 220.750 kb on + strand, within ABZR86_RS01100at 220.751 kb on - strand, within ABZR86_RS01100at 220.751 kb on - strand, within ABZR86_RS01100at 220.751 kb on - strand, within ABZR86_RS01100at 220.763 kb on + strand, within ABZR86_RS01100at 220.764 kb on - strand, within ABZR86_RS01100at 220.822 kb on + strandat 220.822 kb on + strandat 220.834 kb on + strandat 220.834 kb on + strandat 220.835 kb on - strandat 220.919 kb on + strandat 220.919 kb on + strandat 220.919 kb on + strandat 220.919 kb on + strandat 220.919 kb on + strandat 220.920 kb on - strandat 220.920 kb on - strandat 220.927 kb on + strandat 220.927 kb on + strandat 220.928 kb on - strandat 221.181 kb on + strand, within ABZR86_RS01105at 221.181 kb on + strand, within ABZR86_RS01105at 221.181 kb on + strand, within ABZR86_RS01105at 221.181 kb on + strand, within ABZR86_RS01105at 221.181 kb on + strand, within ABZR86_RS01105at 221.181 kb on + strand, within ABZR86_RS01105at 221.182 kb on - strand, within ABZR86_RS01105at 221.182 kb on - strand, within ABZR86_RS01105at 221.182 kb on - strand, within ABZR86_RS01105at 221.492 kb on - strandat 221.492 kb on - strandat 221.620 kb on - strandat 221.799 kb on + strand, within ABZR86_RS01110at 221.799 kb on + strand, within ABZR86_RS01110at 221.800 kb on - strand, within ABZR86_RS01110at 221.800 kb on - strand, within ABZR86_RS01110at 221.922 kb on + strand, within ABZR86_RS01110at 221.922 kb on + strand, within ABZR86_RS01110at 221.923 kb on - strand, within ABZR86_RS01110at 221.923 kb on - strand, within ABZR86_RS01110at 221.982 kb on + strand, within ABZR86_RS01110at 221.983 kb on - strand, within ABZR86_RS01110at 221.983 kb on - strand, within ABZR86_RS01110at 221.983 kb on - strand, within ABZR86_RS01110at 222.033 kb on + strand, within ABZR86_RS01110at 222.033 kb on + strand, within ABZR86_RS01110at 222.034 kb on - strand, within ABZR86_RS01110at 222.034 kb on - strand, within ABZR86_RS01110at 222.034 kb on - strand, within ABZR86_RS01110at 222.034 kb on - strand, within ABZR86_RS01110

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.02 mg/ml
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219,925 + ABZR86_RS01100 0.10 -0.3
219,925 + ABZR86_RS01100 0.10 +0.1
219,926 - ABZR86_RS01100 0.10 +0.2
219,926 - ABZR86_RS01100 0.10 +0.6
220,159 + ABZR86_RS01100 0.32 +0.2
220,160 - ABZR86_RS01100 0.32 -0.0
220,160 - ABZR86_RS01100 0.32 -0.4
220,160 - ABZR86_RS01100 0.32 +0.3
220,160 - ABZR86_RS01100 0.32 +1.1
220,206 + ABZR86_RS01100 0.36 +0.1
220,438 + ABZR86_RS01100 0.57 +0.7
220,438 + ABZR86_RS01100 0.57 -0.4
220,438 + ABZR86_RS01100 0.57 -0.2
220,438 + ABZR86_RS01100 0.57 -0.0
220,438 + ABZR86_RS01100 0.57 -0.9
220,438 + ABZR86_RS01100 0.57 +0.8
220,438 + ABZR86_RS01100 0.57 -0.3
220,438 + ABZR86_RS01100 0.57 -0.3
220,439 - ABZR86_RS01100 0.57 +0.8
220,439 - ABZR86_RS01100 0.57 -0.3
220,439 - ABZR86_RS01100 0.57 +0.7
220,439 - ABZR86_RS01100 0.57 -0.1
220,439 - ABZR86_RS01100 0.57 +0.5
220,439 - ABZR86_RS01100 0.57 -0.1
220,439 - ABZR86_RS01100 0.57 +0.2
220,439 - ABZR86_RS01100 0.57 +0.3
220,439 - ABZR86_RS01100 0.57 -0.0
220,439 - ABZR86_RS01100 0.57 -0.8
220,439 - ABZR86_RS01100 0.57 +0.4
220,548 + ABZR86_RS01100 0.67 -1.5
220,548 + ABZR86_RS01100 0.67 +0.3
220,548 + ABZR86_RS01100 0.67 -0.1
220,549 - ABZR86_RS01100 0.67 -0.4
220,549 - ABZR86_RS01100 0.67 +0.5
220,549 - ABZR86_RS01100 0.67 -0.5
220,552 + ABZR86_RS01100 0.68 -0.2
220,552 + ABZR86_RS01100 0.68 -0.3
220,552 + ABZR86_RS01100 0.68 +1.0
220,552 + ABZR86_RS01100 0.68 -0.1
220,552 + ABZR86_RS01100 0.68 +1.1
220,553 - ABZR86_RS01100 0.68 -1.8
220,553 - ABZR86_RS01100 0.68 -0.0
220,553 - ABZR86_RS01100 0.68 +0.2
220,553 - ABZR86_RS01100 0.68 +0.1
220,553 - ABZR86_RS01100 0.68 +0.8
220,553 - ABZR86_RS01100 0.68 -0.0
220,553 - ABZR86_RS01100 0.68 -0.2
220,553 - ABZR86_RS01100 0.68 -0.3
220,553 - ABZR86_RS01100 0.68 +0.1
220,750 + ABZR86_RS01100 0.86 -0.4
220,751 - ABZR86_RS01100 0.86 +0.5
220,751 - ABZR86_RS01100 0.86 +0.0
220,751 - ABZR86_RS01100 0.86 -0.6
220,763 + ABZR86_RS01100 0.87 +0.8
220,764 - ABZR86_RS01100 0.87 -0.1
220,822 + -0.0
220,822 + +0.3
220,834 + +0.5
220,834 + +1.1
220,835 - +0.3
220,919 + +0.1
220,919 + +0.4
220,919 + -0.0
220,919 + +0.6
220,919 + +0.4
220,920 - -0.7
220,920 - -0.8
220,927 + +0.1
220,927 + +0.8
220,928 - -0.3
221,181 + ABZR86_RS01105 0.51 +0.3
221,181 + ABZR86_RS01105 0.51 -0.2
221,181 + ABZR86_RS01105 0.51 -1.4
221,181 + ABZR86_RS01105 0.51 +0.7
221,181 + ABZR86_RS01105 0.51 -0.4
221,181 + ABZR86_RS01105 0.51 -0.8
221,182 - ABZR86_RS01105 0.51 -0.3
221,182 - ABZR86_RS01105 0.51 -0.4
221,182 - ABZR86_RS01105 0.51 +0.1
221,492 - +0.9
221,492 - -0.8
221,620 - -0.1
221,799 + ABZR86_RS01110 0.22 -1.0
221,799 + ABZR86_RS01110 0.22 +0.5
221,800 - ABZR86_RS01110 0.22 -0.3
221,800 - ABZR86_RS01110 0.22 +0.3
221,922 + ABZR86_RS01110 0.39 -0.0
221,922 + ABZR86_RS01110 0.39 -0.2
221,923 - ABZR86_RS01110 0.39 -0.7
221,923 - ABZR86_RS01110 0.39 +0.0
221,982 + ABZR86_RS01110 0.48 -0.1
221,983 - ABZR86_RS01110 0.48 -1.1
221,983 - ABZR86_RS01110 0.48 +0.3
221,983 - ABZR86_RS01110 0.48 +0.3
222,033 + ABZR86_RS01110 0.55 +0.3
222,033 + ABZR86_RS01110 0.55 +0.2
222,034 - ABZR86_RS01110 0.55 -0.4
222,034 - ABZR86_RS01110 0.55 +0.2
222,034 - ABZR86_RS01110 0.55 -0.3
222,034 - ABZR86_RS01110 0.55 -0.2

Or see this region's nucleotide sequence