Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0817

Experiment: perchlorate 100 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSynpcc7942_0816 and Synpcc7942_0817 are separated by 104 nucleotidesSynpcc7942_0817 and purS are separated by 231 nucleotidespurS and purL overlap by 4 nucleotides Synpcc7942_0816: Synpcc7942_0816 - diguanylate cyclase/phosphodiesterase, at 810,181 to 812,226 _0816 Synpcc7942_0817: Synpcc7942_0817 - putative ferric uptake regulator, FUR family, at 812,331 to 812,723 _0817 Synpcc7942_0818: purS - phosphoribosylformylglycinamidine synthase subunit PurS, at 812,955 to 813,224 purS Synpcc7942_0819: purL - phosphoribosylformylglycinamidine synthase subunit I, at 813,221 to 813,886 purL Position (kb) 812 813Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 811.361 kb on + strand, within Synpcc7942_0816at 811.387 kb on - strand, within Synpcc7942_0816at 811.397 kb on + strandat 811.421 kb on - strandat 811.440 kb on - strand, within Synpcc7942_0816at 811.445 kb on - strand, within Synpcc7942_0816at 811.622 kb on + strand, within Synpcc7942_0816at 811.644 kb on - strand, within Synpcc7942_0816at 811.650 kb on - strand, within Synpcc7942_0816at 811.670 kb on + strand, within Synpcc7942_0816at 811.702 kb on - strand, within Synpcc7942_0816at 811.702 kb on - strand, within Synpcc7942_0816at 811.702 kb on - strand, within Synpcc7942_0816at 811.758 kb on - strand, within Synpcc7942_0816at 811.865 kb on + strand, within Synpcc7942_0816at 811.871 kb on + strand, within Synpcc7942_0816at 811.873 kb on - strand, within Synpcc7942_0816at 812.156 kb on + strandat 812.217 kb on - strandat 812.227 kb on + strandat 812.375 kb on + strand, within Synpcc7942_0817at 812.383 kb on - strand, within Synpcc7942_0817at 812.409 kb on + strand, within Synpcc7942_0817at 812.420 kb on + strand, within Synpcc7942_0817at 812.433 kb on + strand, within Synpcc7942_0817at 812.433 kb on + strand, within Synpcc7942_0817at 812.438 kb on + strand, within Synpcc7942_0817at 812.441 kb on - strand, within Synpcc7942_0817at 812.441 kb on - strand, within Synpcc7942_0817at 812.473 kb on - strand, within Synpcc7942_0817at 812.475 kb on - strand, within Synpcc7942_0817at 812.508 kb on + strand, within Synpcc7942_0817at 812.515 kb on + strand, within Synpcc7942_0817at 812.515 kb on + strand, within Synpcc7942_0817at 812.515 kb on + strand, within Synpcc7942_0817at 812.523 kb on - strand, within Synpcc7942_0817at 812.523 kb on - strand, within Synpcc7942_0817at 812.523 kb on - strand, within Synpcc7942_0817at 812.528 kb on - strand, within Synpcc7942_0817at 812.558 kb on + strand, within Synpcc7942_0817at 812.566 kb on - strand, within Synpcc7942_0817at 812.568 kb on + strand, within Synpcc7942_0817at 812.594 kb on - strand, within Synpcc7942_0817at 812.605 kb on + strand, within Synpcc7942_0817at 812.621 kb on - strand, within Synpcc7942_0817at 812.621 kb on - strand, within Synpcc7942_0817at 812.621 kb on - strand, within Synpcc7942_0817at 812.638 kb on - strand, within Synpcc7942_0817at 812.643 kb on - strand, within Synpcc7942_0817at 812.645 kb on - strand, within Synpcc7942_0817at 812.651 kb on - strand, within Synpcc7942_0817at 812.661 kb on - strand, within Synpcc7942_0817at 812.663 kb on + strand, within Synpcc7942_0817at 812.673 kb on + strand, within Synpcc7942_0817at 812.673 kb on + strand, within Synpcc7942_0817at 812.681 kb on - strand, within Synpcc7942_0817at 812.718 kb on + strandat 812.718 kb on + strandat 812.718 kb on + strandat 812.725 kb on + strandat 812.727 kb on - strandat 812.731 kb on + strandat 812.744 kb on + strandat 812.745 kb on + strandat 812.745 kb on + strandat 812.759 kb on - strandat 812.774 kb on - strandat 812.778 kb on + strandat 812.779 kb on + strandat 812.793 kb on - strandat 812.793 kb on - strandat 812.838 kb on + strandat 812.846 kb on + strandat 812.851 kb on + strandat 812.854 kb on - strandat 812.873 kb on - strandat 812.893 kb on + strandat 812.904 kb on - strandat 813.219 kb on - strandat 813.219 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 100 mM
remove
811,361 + Synpcc7942_0816 0.58 +1.6
811,387 - Synpcc7942_0816 0.59 +0.4
811,397 + +0.9
811,421 - -2.7
811,440 - Synpcc7942_0816 0.62 +0.9
811,445 - Synpcc7942_0816 0.62 -0.9
811,622 + Synpcc7942_0816 0.70 +1.3
811,644 - Synpcc7942_0816 0.72 -0.6
811,650 - Synpcc7942_0816 0.72 +0.3
811,670 + Synpcc7942_0816 0.73 +1.4
811,702 - Synpcc7942_0816 0.74 +2.0
811,702 - Synpcc7942_0816 0.74 -2.1
811,702 - Synpcc7942_0816 0.74 -3.1
811,758 - Synpcc7942_0816 0.77 +1.9
811,865 + Synpcc7942_0816 0.82 -2.1
811,871 + Synpcc7942_0816 0.83 +2.6
811,873 - Synpcc7942_0816 0.83 +1.4
812,156 + -1.2
812,217 - +1.8
812,227 + -1.2
812,375 + Synpcc7942_0817 0.11 -1.7
812,383 - Synpcc7942_0817 0.13 -1.2
812,409 + Synpcc7942_0817 0.20 -3.7
812,420 + Synpcc7942_0817 0.23 -2.5
812,433 + Synpcc7942_0817 0.26 -2.2
812,433 + Synpcc7942_0817 0.26 -3.2
812,438 + Synpcc7942_0817 0.27 -0.3
812,441 - Synpcc7942_0817 0.28 -3.2
812,441 - Synpcc7942_0817 0.28 -0.0
812,473 - Synpcc7942_0817 0.36 -1.9
812,475 - Synpcc7942_0817 0.37 -1.0
812,508 + Synpcc7942_0817 0.45 -1.6
812,515 + Synpcc7942_0817 0.47 -3.0
812,515 + Synpcc7942_0817 0.47 -0.6
812,515 + Synpcc7942_0817 0.47 -0.6
812,523 - Synpcc7942_0817 0.49 -4.7
812,523 - Synpcc7942_0817 0.49 -4.0
812,523 - Synpcc7942_0817 0.49 -0.3
812,528 - Synpcc7942_0817 0.50 +2.8
812,558 + Synpcc7942_0817 0.58 -3.2
812,566 - Synpcc7942_0817 0.60 +0.3
812,568 + Synpcc7942_0817 0.60 +0.8
812,594 - Synpcc7942_0817 0.67 -3.5
812,605 + Synpcc7942_0817 0.70 -2.3
812,621 - Synpcc7942_0817 0.74 -1.2
812,621 - Synpcc7942_0817 0.74 -2.5
812,621 - Synpcc7942_0817 0.74 -2.7
812,638 - Synpcc7942_0817 0.78 +1.2
812,643 - Synpcc7942_0817 0.79 -0.6
812,645 - Synpcc7942_0817 0.80 -1.3
812,651 - Synpcc7942_0817 0.81 -0.8
812,661 - Synpcc7942_0817 0.84 -1.2
812,663 + Synpcc7942_0817 0.84 -1.5
812,673 + Synpcc7942_0817 0.87 +0.2
812,673 + Synpcc7942_0817 0.87 -3.2
812,681 - Synpcc7942_0817 0.89 -1.7
812,718 + +0.4
812,718 + -0.4
812,718 + -0.0
812,725 + -0.2
812,727 - +0.6
812,731 + -0.1
812,744 + -2.2
812,745 + +0.1
812,745 + -1.0
812,759 - -4.2
812,774 - -3.2
812,778 + +1.3
812,779 + -1.3
812,793 - +2.2
812,793 - -0.6
812,838 + +1.3
812,846 + +0.6
812,851 + -0.3
812,854 - +3.6
812,873 - -1.7
812,893 + -1.7
812,904 - -1.2
813,219 - +1.5
813,219 - -0.7

Or see this region's nucleotide sequence