Experiment: perchlorate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glgC and rpe are separated by 138 nucleotides rpe and Synpcc7942_0605 are separated by 77 nucleotides
Synpcc7942_0603: glgC - glucose-1-phosphate adenylyltransferase, at 591,459 to 592,751
glgC
Synpcc7942_0604: rpe - ribulose-phosphate 3-epimerase, at 592,890 to 593,633
rpe
Synpcc7942_0605: Synpcc7942_0605 - hypothetical protein, at 593,711 to 594,694
_0605
Position (kb) 592
593
594 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 592.010 kb on - strand, within glgC at 592.383 kb on - strand, within glgC at 592.570 kb on + strand, within glgC at 592.769 kb on - strand at 592.769 kb on - strand at 592.807 kb on + strand at 592.837 kb on + strand at 592.837 kb on + strand at 592.837 kb on + strand at 592.845 kb on - strand at 592.850 kb on - strand at 592.852 kb on + strand at 592.861 kb on - strand at 592.863 kb on + strand at 592.871 kb on - strand at 592.873 kb on + strand at 592.873 kb on + strand at 592.880 kb on + strand at 592.887 kb on - strand at 592.888 kb on - strand at 592.896 kb on - strand at 592.908 kb on - strand at 592.947 kb on - strand at 592.947 kb on - strand at 593.636 kb on - strand at 593.636 kb on - strand at 593.646 kb on + strand at 593.654 kb on - strand at 593.661 kb on - strand at 593.701 kb on + strand at 593.703 kb on - strand at 593.834 kb on - strand, within Synpcc7942_0605 at 593.840 kb on + strand, within Synpcc7942_0605 at 593.840 kb on + strand, within Synpcc7942_0605 at 593.872 kb on + strand, within Synpcc7942_0605 at 593.880 kb on - strand, within Synpcc7942_0605 at 593.880 kb on - strand, within Synpcc7942_0605 at 593.880 kb on - strand, within Synpcc7942_0605 at 593.933 kb on - strand, within Synpcc7942_0605 at 593.942 kb on + strand, within Synpcc7942_0605 at 593.958 kb on + strand, within Synpcc7942_0605 at 593.966 kb on - strand, within Synpcc7942_0605 at 594.023 kb on - strand, within Synpcc7942_0605 at 594.087 kb on - strand, within Synpcc7942_0605 at 594.088 kb on + strand, within Synpcc7942_0605 at 594.088 kb on + strand, within Synpcc7942_0605 at 594.096 kb on - strand, within Synpcc7942_0605 at 594.096 kb on - strand at 594.096 kb on - strand, within Synpcc7942_0605 at 594.096 kb on - strand, within Synpcc7942_0605 at 594.096 kb on - strand, within Synpcc7942_0605 at 594.096 kb on - strand, within Synpcc7942_0605 at 594.118 kb on - strand, within Synpcc7942_0605 at 594.123 kb on - strand, within Synpcc7942_0605 at 594.137 kb on + strand, within Synpcc7942_0605 at 594.137 kb on - strand, within Synpcc7942_0605 at 594.145 kb on + strand, within Synpcc7942_0605 at 594.145 kb on + strand, within Synpcc7942_0605 at 594.145 kb on + strand, within Synpcc7942_0605 at 594.153 kb on - strand, within Synpcc7942_0605 at 594.153 kb on - strand, within Synpcc7942_0605 at 594.153 kb on - strand, within Synpcc7942_0605 at 594.153 kb on - strand, within Synpcc7942_0605 at 594.155 kb on + strand, within Synpcc7942_0605 at 594.169 kb on + strand, within Synpcc7942_0605 at 594.177 kb on - strand, within Synpcc7942_0605 at 594.177 kb on - strand, within Synpcc7942_0605 at 594.177 kb on - strand, within Synpcc7942_0605 at 594.177 kb on - strand, within Synpcc7942_0605 at 594.209 kb on + strand, within Synpcc7942_0605 at 594.246 kb on + strand, within Synpcc7942_0605 at 594.268 kb on - strand, within Synpcc7942_0605 at 594.286 kb on + strand, within Synpcc7942_0605 at 594.309 kb on + strand, within Synpcc7942_0605 at 594.319 kb on + strand, within Synpcc7942_0605 at 594.322 kb on + strand, within Synpcc7942_0605 at 594.322 kb on + strand, within Synpcc7942_0605 at 594.322 kb on + strand, within Synpcc7942_0605 at 594.322 kb on + strand, within Synpcc7942_0605 at 594.330 kb on - strand, within Synpcc7942_0605 at 594.330 kb on - strand, within Synpcc7942_0605 at 594.330 kb on - strand, within Synpcc7942_0605 at 594.330 kb on - strand, within Synpcc7942_0605 at 594.330 kb on - strand, within Synpcc7942_0605 at 594.330 kb on - strand, within Synpcc7942_0605 at 594.330 kb on - strand, within Synpcc7942_0605 at 594.330 kb on - strand, within Synpcc7942_0605 at 594.347 kb on + strand, within Synpcc7942_0605 at 594.387 kb on + strand, within Synpcc7942_0605 at 594.418 kb on + strand, within Synpcc7942_0605 at 594.432 kb on + strand, within Synpcc7942_0605 at 594.440 kb on - strand, within Synpcc7942_0605 at 594.448 kb on - strand, within Synpcc7942_0605 at 594.527 kb on - strand, within Synpcc7942_0605 at 594.529 kb on + strand, within Synpcc7942_0605 at 594.532 kb on - strand, within Synpcc7942_0605 at 594.546 kb on - strand, within Synpcc7942_0605 at 594.553 kb on + strand, within Synpcc7942_0605 at 594.572 kb on - strand, within Synpcc7942_0605 at 594.593 kb on + strand, within Synpcc7942_0605 at 594.601 kb on - strand at 594.603 kb on + strand at 594.625 kb on + strand at 594.625 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 100 mM remove 592,010 - glgC Synpcc7942_0603 0.43 -2.7 592,383 - glgC Synpcc7942_0603 0.71 -3.7 592,570 + glgC Synpcc7942_0603 0.86 -1.1 592,769 - -1.1 592,769 - -1.1 592,807 + -0.6 592,837 + -3.1 592,837 + -1.6 592,837 + -0.1 592,845 - -0.4 592,850 - +1.4 592,852 + +0.0 592,861 - -0.4 592,863 + +0.4 592,871 - +1.9 592,873 + -1.7 592,873 + +0.9 592,880 + -0.5 592,887 - +2.2 592,888 - +3.2 592,896 - +1.8 592,908 - +0.4 592,947 - +1.1 592,947 - -1.1 593,636 - +0.3 593,636 - -2.0 593,646 + -2.7 593,654 - -2.1 593,661 - +2.2 593,701 + -0.1 593,703 - -1.1 593,834 - Synpcc7942_0605 0.12 +0.6 593,840 + Synpcc7942_0605 0.13 +0.9 593,840 + Synpcc7942_0605 0.13 -0.6 593,872 + Synpcc7942_0605 0.16 -0.6 593,880 - Synpcc7942_0605 0.17 +1.0 593,880 - Synpcc7942_0605 0.17 -2.1 593,880 - Synpcc7942_0605 0.17 -0.8 593,933 - Synpcc7942_0605 0.23 +0.9 593,942 + Synpcc7942_0605 0.23 +0.8 593,958 + Synpcc7942_0605 0.25 +1.0 593,966 - Synpcc7942_0605 0.26 -0.8 594,023 - Synpcc7942_0605 0.32 -0.3 594,087 - Synpcc7942_0605 0.38 +0.2 594,088 + Synpcc7942_0605 0.38 +1.7 594,088 + Synpcc7942_0605 0.38 +1.9 594,096 - Synpcc7942_0605 0.39 -1.1 594,096 - -0.1 594,096 - Synpcc7942_0605 0.39 +1.7 594,096 - Synpcc7942_0605 0.39 +0.4 594,096 - Synpcc7942_0605 0.39 +1.0 594,096 - Synpcc7942_0605 0.39 +0.1 594,118 - Synpcc7942_0605 0.41 -0.7 594,123 - Synpcc7942_0605 0.42 +0.9 594,137 + Synpcc7942_0605 0.43 +0.8 594,137 - Synpcc7942_0605 0.43 +1.8 594,145 + Synpcc7942_0605 0.44 +0.9 594,145 + Synpcc7942_0605 0.44 +0.9 594,145 + Synpcc7942_0605 0.44 -0.6 594,153 - Synpcc7942_0605 0.45 +1.4 594,153 - Synpcc7942_0605 0.45 -0.6 594,153 - Synpcc7942_0605 0.45 +1.6 594,153 - Synpcc7942_0605 0.45 +0.1 594,155 + Synpcc7942_0605 0.45 -0.5 594,169 + Synpcc7942_0605 0.47 -0.9 594,177 - Synpcc7942_0605 0.47 +2.0 594,177 - Synpcc7942_0605 0.47 +1.4 594,177 - Synpcc7942_0605 0.47 -0.1 594,177 - Synpcc7942_0605 0.47 +0.4 594,209 + Synpcc7942_0605 0.51 -2.1 594,246 + Synpcc7942_0605 0.54 +0.9 594,268 - Synpcc7942_0605 0.57 +0.9 594,286 + Synpcc7942_0605 0.58 +0.7 594,309 + Synpcc7942_0605 0.61 -1.6 594,319 + Synpcc7942_0605 0.62 +0.9 594,322 + Synpcc7942_0605 0.62 +0.9 594,322 + Synpcc7942_0605 0.62 +0.7 594,322 + Synpcc7942_0605 0.62 +2.2 594,322 + Synpcc7942_0605 0.62 +2.0 594,330 - Synpcc7942_0605 0.63 +0.4 594,330 - Synpcc7942_0605 0.63 -2.7 594,330 - Synpcc7942_0605 0.63 +2.0 594,330 - Synpcc7942_0605 0.63 +0.4 594,330 - Synpcc7942_0605 0.63 +0.2 594,330 - Synpcc7942_0605 0.63 -1.6 594,330 - Synpcc7942_0605 0.63 -2.1 594,330 - Synpcc7942_0605 0.63 -0.6 594,347 + Synpcc7942_0605 0.65 -3.1 594,387 + Synpcc7942_0605 0.69 -1.2 594,418 + Synpcc7942_0605 0.72 +0.6 594,432 + Synpcc7942_0605 0.73 +1.7 594,440 - Synpcc7942_0605 0.74 -0.6 594,448 - Synpcc7942_0605 0.75 +0.6 594,527 - Synpcc7942_0605 0.83 -1.5 594,529 + Synpcc7942_0605 0.83 +1.9 594,532 - Synpcc7942_0605 0.83 +0.4 594,546 - Synpcc7942_0605 0.85 +1.8 594,553 + Synpcc7942_0605 0.86 +2.2 594,572 - Synpcc7942_0605 0.88 +0.9 594,593 + Synpcc7942_0605 0.90 +2.2 594,601 - +1.3 594,603 + +0.7 594,625 + -1.1 594,625 + +1.7
Or see this region's nucleotide sequence