Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29120

Experiment: R2A 23C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS29115 and RR42_RS29120 are separated by 8 nucleotidesRR42_RS29120 and RR42_RS29125 are separated by 176 nucleotidesRR42_RS29125 and RR42_RS29130 are separated by 45 nucleotides RR42_RS29115: RR42_RS29115 - LysR family transcriptional regulator, at 1,888,706 to 1,889,632 _RS29115 RR42_RS29120: RR42_RS29120 - alpha-dehydro-beta-deoxy-D-glucarate aldolase, at 1,889,641 to 1,890,408 _RS29120 RR42_RS29125: RR42_RS29125 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 1,890,585 to 1,890,959 _RS29125 RR42_RS29130: RR42_RS29130 - dehydrogenase, at 1,891,005 to 1,892,099 _RS29130 Position (kb) 1889 1890 1891Strain fitness (log2 ratio) -1 0 1 2at 1888.652 kb on - strandat 1888.748 kb on - strandat 1888.748 kb on - strandat 1888.961 kb on - strand, within RR42_RS29115at 1889.193 kb on + strand, within RR42_RS29115at 1889.194 kb on - strand, within RR42_RS29115at 1889.204 kb on + strand, within RR42_RS29115at 1889.205 kb on - strand, within RR42_RS29115at 1889.434 kb on - strand, within RR42_RS29115at 1889.468 kb on + strand, within RR42_RS29115at 1889.537 kb on + strand, within RR42_RS29115at 1889.537 kb on + strand, within RR42_RS29115at 1889.976 kb on + strand, within RR42_RS29120at 1889.976 kb on + strand, within RR42_RS29120at 1889.977 kb on - strand, within RR42_RS29120at 1889.977 kb on - strand, within RR42_RS29120at 1889.977 kb on - strand, within RR42_RS29120at 1889.977 kb on - strand, within RR42_RS29120at 1889.999 kb on + strand, within RR42_RS29120at 1890.000 kb on - strand, within RR42_RS29120at 1890.043 kb on + strand, within RR42_RS29120at 1891.283 kb on + strand, within RR42_RS29130at 1891.283 kb on + strand, within RR42_RS29130at 1891.284 kb on - strand, within RR42_RS29130at 1891.284 kb on - strand, within RR42_RS29130at 1891.384 kb on + strand, within RR42_RS29130at 1891.384 kb on + strand, within RR42_RS29130at 1891.385 kb on - strand, within RR42_RS29130at 1891.385 kb on - strand, within RR42_RS29130

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A 23C
remove
1,888,652 - +1.4
1,888,748 - +1.3
1,888,748 - +0.1
1,888,961 - RR42_RS29115 0.28 +0.5
1,889,193 + RR42_RS29115 0.53 +0.1
1,889,194 - RR42_RS29115 0.53 +0.3
1,889,204 + RR42_RS29115 0.54 -0.1
1,889,205 - RR42_RS29115 0.54 +0.1
1,889,434 - RR42_RS29115 0.79 +0.7
1,889,468 + RR42_RS29115 0.82 -0.1
1,889,537 + RR42_RS29115 0.90 -1.3
1,889,537 + RR42_RS29115 0.90 +0.9
1,889,976 + RR42_RS29120 0.44 +0.7
1,889,976 + RR42_RS29120 0.44 +1.5
1,889,977 - RR42_RS29120 0.44 +1.7
1,889,977 - RR42_RS29120 0.44 +2.3
1,889,977 - RR42_RS29120 0.44 +0.0
1,889,977 - RR42_RS29120 0.44 +0.7
1,889,999 + RR42_RS29120 0.47 -0.1
1,890,000 - RR42_RS29120 0.47 +0.0
1,890,043 + RR42_RS29120 0.52 +1.0
1,891,283 + RR42_RS29130 0.25 -0.8
1,891,283 + RR42_RS29130 0.25 +0.7
1,891,284 - RR42_RS29130 0.25 +0.3
1,891,284 - RR42_RS29130 0.25 -0.2
1,891,384 + RR42_RS29130 0.35 +0.4
1,891,384 + RR42_RS29130 0.35 -0.1
1,891,385 - RR42_RS29130 0.35 -1.4
1,891,385 - RR42_RS29130 0.35 -0.7

Or see this region's nucleotide sequence