Experiment: R2A 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS28365 and RR42_RS28370 are separated by 546 nucleotides RR42_RS28370 and RR42_RS28375 are separated by 8 nucleotides
RR42_RS28365: RR42_RS28365 - GntR family transcriptional regulator, at 1,723,831 to 1,724,544
_RS28365
RR42_RS28370: RR42_RS28370 - CoA-binding protein, at 1,725,091 to 1,727,196
_RS28370
RR42_RS28375: RR42_RS28375 - acyl-CoA dehydrogenase, at 1,727,205 to 1,728,413
_RS28375
Position (kb) 1725
1726
1727
1728 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1724.091 kb on + strand, within RR42_RS28365 at 1724.091 kb on + strand, within RR42_RS28365 at 1724.091 kb on + strand, within RR42_RS28365 at 1724.091 kb on + strand, within RR42_RS28365 at 1724.091 kb on + strand, within RR42_RS28365 at 1724.092 kb on - strand, within RR42_RS28365 at 1724.092 kb on - strand, within RR42_RS28365 at 1724.092 kb on - strand, within RR42_RS28365 at 1724.108 kb on + strand, within RR42_RS28365 at 1724.108 kb on + strand, within RR42_RS28365 at 1724.109 kb on - strand, within RR42_RS28365 at 1724.145 kb on - strand, within RR42_RS28365 at 1724.274 kb on - strand, within RR42_RS28365 at 1724.274 kb on - strand, within RR42_RS28365 at 1724.820 kb on - strand at 1725.098 kb on + strand at 1725.099 kb on - strand at 1725.533 kb on + strand, within RR42_RS28370 at 1725.533 kb on + strand, within RR42_RS28370 at 1725.701 kb on - strand, within RR42_RS28370 at 1725.701 kb on - strand, within RR42_RS28370 at 1725.701 kb on - strand, within RR42_RS28370 at 1726.011 kb on + strand, within RR42_RS28370 at 1726.038 kb on + strand, within RR42_RS28370 at 1726.039 kb on - strand, within RR42_RS28370 at 1726.130 kb on - strand, within RR42_RS28370 at 1726.157 kb on - strand, within RR42_RS28370 at 1726.293 kb on + strand, within RR42_RS28370 at 1726.294 kb on - strand, within RR42_RS28370 at 1726.294 kb on - strand, within RR42_RS28370 at 1726.337 kb on + strand, within RR42_RS28370 at 1726.555 kb on + strand, within RR42_RS28370 at 1727.015 kb on + strand at 1727.015 kb on + strand at 1727.124 kb on + strand at 1727.124 kb on + strand at 1727.125 kb on - strand at 1727.125 kb on - strand at 1727.331 kb on + strand, within RR42_RS28375 at 1727.331 kb on + strand, within RR42_RS28375 at 1727.331 kb on + strand, within RR42_RS28375 at 1727.331 kb on + strand, within RR42_RS28375 at 1727.428 kb on - strand, within RR42_RS28375 at 1727.429 kb on + strand, within RR42_RS28375 at 1727.429 kb on + strand, within RR42_RS28375 at 1727.561 kb on + strand, within RR42_RS28375 at 1727.567 kb on + strand, within RR42_RS28375 at 1727.568 kb on - strand, within RR42_RS28375 at 1727.568 kb on - strand, within RR42_RS28375 at 1727.627 kb on + strand, within RR42_RS28375 at 1727.695 kb on - strand, within RR42_RS28375 at 1727.857 kb on - strand, within RR42_RS28375 at 1727.929 kb on - strand, within RR42_RS28375 at 1728.088 kb on - strand, within RR42_RS28375 at 1728.189 kb on + strand, within RR42_RS28375 at 1728.190 kb on - strand, within RR42_RS28375 at 1728.190 kb on - strand, within RR42_RS28375
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 23C remove 1,724,091 + RR42_RS28365 0.36 -0.1 1,724,091 + RR42_RS28365 0.36 +0.3 1,724,091 + RR42_RS28365 0.36 +0.3 1,724,091 + RR42_RS28365 0.36 -0.6 1,724,091 + RR42_RS28365 0.36 +0.0 1,724,092 - RR42_RS28365 0.37 -0.1 1,724,092 - RR42_RS28365 0.37 -0.5 1,724,092 - RR42_RS28365 0.37 -1.6 1,724,108 + RR42_RS28365 0.39 -0.1 1,724,108 + RR42_RS28365 0.39 +0.2 1,724,109 - RR42_RS28365 0.39 -2.1 1,724,145 - RR42_RS28365 0.44 -0.1 1,724,274 - RR42_RS28365 0.62 +0.3 1,724,274 - RR42_RS28365 0.62 -0.1 1,724,820 - +1.6 1,725,098 + +1.3 1,725,099 - -0.6 1,725,533 + RR42_RS28370 0.21 +0.2 1,725,533 + RR42_RS28370 0.21 -0.1 1,725,701 - RR42_RS28370 0.29 +0.1 1,725,701 - RR42_RS28370 0.29 -0.3 1,725,701 - RR42_RS28370 0.29 +1.0 1,726,011 + RR42_RS28370 0.44 +0.0 1,726,038 + RR42_RS28370 0.45 -0.0 1,726,039 - RR42_RS28370 0.45 +0.7 1,726,130 - RR42_RS28370 0.49 +0.8 1,726,157 - RR42_RS28370 0.51 +1.3 1,726,293 + RR42_RS28370 0.57 +1.4 1,726,294 - RR42_RS28370 0.57 +0.5 1,726,294 - RR42_RS28370 0.57 -0.4 1,726,337 + RR42_RS28370 0.59 +0.6 1,726,555 + RR42_RS28370 0.70 +1.8 1,727,015 + +1.7 1,727,015 + +0.5 1,727,124 + +0.4 1,727,124 + +0.1 1,727,125 - +0.6 1,727,125 - -0.0 1,727,331 + RR42_RS28375 0.10 +0.4 1,727,331 + RR42_RS28375 0.10 -0.6 1,727,331 + RR42_RS28375 0.10 +0.2 1,727,331 + RR42_RS28375 0.10 -0.1 1,727,428 - RR42_RS28375 0.18 +0.2 1,727,429 + RR42_RS28375 0.19 +0.5 1,727,429 + RR42_RS28375 0.19 +0.9 1,727,561 + RR42_RS28375 0.29 +0.0 1,727,567 + RR42_RS28375 0.30 -0.1 1,727,568 - RR42_RS28375 0.30 +1.2 1,727,568 - RR42_RS28375 0.30 -0.2 1,727,627 + RR42_RS28375 0.35 -1.9 1,727,695 - RR42_RS28375 0.41 -0.1 1,727,857 - RR42_RS28375 0.54 +1.3 1,727,929 - RR42_RS28375 0.60 -0.6 1,728,088 - RR42_RS28375 0.73 -0.6 1,728,189 + RR42_RS28375 0.81 -0.9 1,728,190 - RR42_RS28375 0.81 +3.0 1,728,190 - RR42_RS28375 0.81 +0.3
Or see this region's nucleotide sequence