Experiment: R2A 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS27370 and RR42_RS27375 are separated by 223 nucleotides RR42_RS27375 and RR42_RS27380 are separated by 39 nucleotides RR42_RS27380 and RR42_RS27385 are separated by 20 nucleotides
RR42_RS27370: RR42_RS27370 - zinc finger UBP-type protein, at 1,492,860 to 1,493,120
_RS27370
RR42_RS27375: RR42_RS27375 - NAD(P)H-quinone oxidoreductase, at 1,493,344 to 1,493,964
_RS27375
RR42_RS27380: RR42_RS27380 - 4-aminobutyrate aminotransferase, at 1,494,004 to 1,495,311
_RS27380
RR42_RS27385: RR42_RS27385 - aminoglycoside phosphotransferase, at 1,495,332 to 1,496,369
_RS27385
Position (kb) 1494
1495
1496 Strain fitness (log2 ratio) -1
0
1 at 1493.188 kb on - strand at 1493.188 kb on - strand at 1493.188 kb on - strand at 1493.251 kb on + strand at 1493.371 kb on + strand at 1493.371 kb on + strand at 1493.371 kb on + strand at 1493.372 kb on - strand at 1493.372 kb on - strand at 1493.372 kb on - strand at 1493.381 kb on - strand at 1493.381 kb on - strand at 1493.393 kb on - strand at 1493.607 kb on + strand, within RR42_RS27375 at 1493.607 kb on + strand, within RR42_RS27375 at 1493.607 kb on + strand, within RR42_RS27375 at 1493.608 kb on - strand, within RR42_RS27375 at 1493.842 kb on + strand, within RR42_RS27375 at 1493.843 kb on - strand, within RR42_RS27375 at 1493.914 kb on + strand at 1493.915 kb on - strand at 1494.308 kb on + strand, within RR42_RS27380 at 1494.309 kb on - strand, within RR42_RS27380 at 1494.409 kb on - strand, within RR42_RS27380 at 1494.891 kb on - strand, within RR42_RS27380 at 1495.034 kb on + strand, within RR42_RS27380 at 1495.059 kb on - strand, within RR42_RS27380 at 1495.146 kb on + strand, within RR42_RS27380 at 1495.146 kb on + strand, within RR42_RS27380 at 1495.148 kb on + strand, within RR42_RS27380 at 1495.148 kb on + strand, within RR42_RS27380 at 1495.149 kb on - strand, within RR42_RS27380 at 1495.438 kb on + strand, within RR42_RS27385 at 1495.439 kb on - strand, within RR42_RS27385 at 1495.727 kb on + strand, within RR42_RS27385 at 1495.728 kb on - strand, within RR42_RS27385 at 1495.729 kb on + strand, within RR42_RS27385 at 1495.729 kb on + strand, within RR42_RS27385 at 1495.729 kb on + strand, within RR42_RS27385 at 1495.729 kb on + strand, within RR42_RS27385 at 1495.730 kb on - strand, within RR42_RS27385 at 1495.730 kb on - strand, within RR42_RS27385 at 1495.730 kb on - strand, within RR42_RS27385 at 1495.730 kb on - strand, within RR42_RS27385 at 1496.023 kb on + strand, within RR42_RS27385 at 1496.024 kb on - strand, within RR42_RS27385 at 1496.212 kb on + strand, within RR42_RS27385
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 23C remove 1,493,188 - -0.3 1,493,188 - -1.2 1,493,188 - +0.4 1,493,251 + -0.0 1,493,371 + +0.3 1,493,371 + -0.2 1,493,371 + +0.9 1,493,372 - +0.1 1,493,372 - -0.1 1,493,372 - +0.5 1,493,381 - -0.4 1,493,381 - -0.4 1,493,393 - -1.1 1,493,607 + RR42_RS27375 0.42 -0.2 1,493,607 + RR42_RS27375 0.42 -0.1 1,493,607 + RR42_RS27375 0.42 +0.3 1,493,608 - RR42_RS27375 0.43 +0.2 1,493,842 + RR42_RS27375 0.80 -0.2 1,493,843 - RR42_RS27375 0.80 +0.6 1,493,914 + -0.0 1,493,915 - +0.3 1,494,308 + RR42_RS27380 0.23 +1.4 1,494,309 - RR42_RS27380 0.23 +1.7 1,494,409 - RR42_RS27380 0.31 +0.3 1,494,891 - RR42_RS27380 0.68 -1.0 1,495,034 + RR42_RS27380 0.79 +0.2 1,495,059 - RR42_RS27380 0.81 -0.3 1,495,146 + RR42_RS27380 0.87 +0.8 1,495,146 + RR42_RS27380 0.87 +0.9 1,495,148 + RR42_RS27380 0.87 +0.4 1,495,148 + RR42_RS27380 0.87 +0.1 1,495,149 - RR42_RS27380 0.88 +0.6 1,495,438 + RR42_RS27385 0.10 +1.1 1,495,439 - RR42_RS27385 0.10 -0.1 1,495,727 + RR42_RS27385 0.38 +0.2 1,495,728 - RR42_RS27385 0.38 +0.5 1,495,729 + RR42_RS27385 0.38 +0.7 1,495,729 + RR42_RS27385 0.38 -0.6 1,495,729 + RR42_RS27385 0.38 +0.6 1,495,729 + RR42_RS27385 0.38 +1.0 1,495,730 - RR42_RS27385 0.38 +0.3 1,495,730 - RR42_RS27385 0.38 -1.3 1,495,730 - RR42_RS27385 0.38 +0.1 1,495,730 - RR42_RS27385 0.38 +0.3 1,496,023 + RR42_RS27385 0.67 +0.1 1,496,024 - RR42_RS27385 0.67 -0.0 1,496,212 + RR42_RS27385 0.85 -1.1
Or see this region's nucleotide sequence