Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26430

Experiment: R2A 23C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS26425 and RR42_RS26430 are separated by 14 nucleotidesRR42_RS26430 and RR42_RS26435 are separated by 9 nucleotidesRR42_RS26435 and RR42_RS26440 are separated by 74 nucleotides RR42_RS26425: RR42_RS26425 - biphenyl 2,3-dioxygenase, at 1,285,066 to 1,286,355 _RS26425 RR42_RS26430: RR42_RS26430 - ferredoxin reductase, at 1,286,370 to 1,287,656 _RS26430 RR42_RS26435: RR42_RS26435 - ferredoxin, at 1,287,666 to 1,287,983 _RS26435 RR42_RS26440: RR42_RS26440 - ABC transporter permease, at 1,288,058 to 1,289,116 _RS26440 Position (kb) 1286 1287 1288Strain fitness (log2 ratio) -2 -1 0 1at 1285.739 kb on + strand, within RR42_RS26425at 1285.806 kb on + strand, within RR42_RS26425at 1285.806 kb on + strand, within RR42_RS26425at 1285.807 kb on - strand, within RR42_RS26425at 1285.808 kb on + strand, within RR42_RS26425at 1285.809 kb on - strand, within RR42_RS26425at 1285.809 kb on - strand, within RR42_RS26425at 1285.838 kb on + strand, within RR42_RS26425at 1286.247 kb on - strandat 1286.351 kb on + strandat 1286.352 kb on - strandat 1286.352 kb on - strandat 1286.618 kb on - strand, within RR42_RS26430at 1286.654 kb on + strand, within RR42_RS26430at 1287.353 kb on - strand, within RR42_RS26430at 1287.529 kb on + strandat 1287.824 kb on - strand, within RR42_RS26435at 1287.844 kb on + strand, within RR42_RS26435at 1287.896 kb on - strand, within RR42_RS26435at 1288.250 kb on - strand, within RR42_RS26440at 1288.641 kb on + strand, within RR42_RS26440at 1288.644 kb on + strand, within RR42_RS26440at 1288.645 kb on - strand, within RR42_RS26440

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A 23C
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1,285,739 + RR42_RS26425 0.52 -0.5
1,285,806 + RR42_RS26425 0.57 +0.7
1,285,806 + RR42_RS26425 0.57 +0.2
1,285,807 - RR42_RS26425 0.57 -0.6
1,285,808 + RR42_RS26425 0.58 +0.5
1,285,809 - RR42_RS26425 0.58 +1.0
1,285,809 - RR42_RS26425 0.58 -0.8
1,285,838 + RR42_RS26425 0.60 -1.2
1,286,247 - -0.5
1,286,351 + -0.1
1,286,352 - -0.1
1,286,352 - -2.2
1,286,618 - RR42_RS26430 0.19 +0.2
1,286,654 + RR42_RS26430 0.22 +0.3
1,287,353 - RR42_RS26430 0.76 +1.5
1,287,529 + +0.4
1,287,824 - RR42_RS26435 0.50 +0.2
1,287,844 + RR42_RS26435 0.56 +0.1
1,287,896 - RR42_RS26435 0.72 +0.1
1,288,250 - RR42_RS26440 0.18 -0.0
1,288,641 + RR42_RS26440 0.55 +0.5
1,288,644 + RR42_RS26440 0.55 +0.2
1,288,645 - RR42_RS26440 0.55 +0.1

Or see this region's nucleotide sequence