Experiment: R2A 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23145 and RR42_RS23150 are separated by 29 nucleotides RR42_RS23150 and RR42_RS23155 are separated by 63 nucleotides
RR42_RS23145: RR42_RS23145 - acyl-CoA transferase, at 524,729 to 525,826
_RS23145
RR42_RS23150: RR42_RS23150 - ABC transporter substrate-binding protein, at 525,856 to 526,839
_RS23150
RR42_RS23155: RR42_RS23155 - acyl-CoA dehydrogenase, at 526,903 to 528,084
_RS23155
Position (kb) 525
526
527 Strain fitness (log2 ratio) -1
0
1 at 525.139 kb on + strand, within RR42_RS23145 at 525.139 kb on + strand at 525.139 kb on + strand, within RR42_RS23145 at 525.140 kb on - strand, within RR42_RS23145 at 525.140 kb on - strand, within RR42_RS23145 at 525.187 kb on - strand, within RR42_RS23145 at 525.394 kb on - strand, within RR42_RS23145 at 525.412 kb on - strand, within RR42_RS23145 at 525.412 kb on - strand, within RR42_RS23145 at 525.412 kb on - strand, within RR42_RS23145 at 525.441 kb on + strand, within RR42_RS23145 at 525.442 kb on - strand, within RR42_RS23145 at 526.202 kb on + strand, within RR42_RS23150 at 526.286 kb on + strand, within RR42_RS23150 at 526.373 kb on + strand, within RR42_RS23150 at 526.430 kb on + strand, within RR42_RS23150 at 526.431 kb on - strand, within RR42_RS23150 at 526.431 kb on - strand, within RR42_RS23150 at 526.431 kb on - strand, within RR42_RS23150 at 526.431 kb on - strand, within RR42_RS23150 at 526.431 kb on - strand, within RR42_RS23150 at 526.431 kb on - strand, within RR42_RS23150 at 526.574 kb on + strand, within RR42_RS23150 at 526.575 kb on - strand, within RR42_RS23150 at 526.839 kb on + strand at 526.840 kb on - strand at 526.856 kb on - strand at 526.947 kb on + strand at 526.947 kb on + strand at 527.057 kb on - strand, within RR42_RS23155 at 527.057 kb on - strand, within RR42_RS23155 at 527.270 kb on + strand, within RR42_RS23155 at 527.288 kb on + strand, within RR42_RS23155 at 527.289 kb on - strand, within RR42_RS23155 at 527.439 kb on + strand, within RR42_RS23155 at 527.440 kb on - strand, within RR42_RS23155 at 527.462 kb on + strand, within RR42_RS23155 at 527.462 kb on + strand, within RR42_RS23155 at 527.592 kb on - strand, within RR42_RS23155 at 527.592 kb on - strand, within RR42_RS23155 at 527.729 kb on + strand, within RR42_RS23155 at 527.756 kb on + strand, within RR42_RS23155 at 527.756 kb on + strand, within RR42_RS23155 at 527.756 kb on + strand, within RR42_RS23155 at 527.757 kb on - strand, within RR42_RS23155 at 527.766 kb on + strand, within RR42_RS23155 at 527.766 kb on + strand, within RR42_RS23155 at 527.766 kb on + strand, within RR42_RS23155 at 527.766 kb on + strand, within RR42_RS23155 at 527.767 kb on - strand, within RR42_RS23155
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 23C remove 525,139 + RR42_RS23145 0.37 -0.5 525,139 + +1.1 525,139 + RR42_RS23145 0.37 +0.3 525,140 - RR42_RS23145 0.37 +0.2 525,140 - RR42_RS23145 0.37 +0.0 525,187 - RR42_RS23145 0.42 -0.2 525,394 - RR42_RS23145 0.61 -0.4 525,412 - RR42_RS23145 0.62 +0.5 525,412 - RR42_RS23145 0.62 +0.1 525,412 - RR42_RS23145 0.62 +0.3 525,441 + RR42_RS23145 0.65 -0.4 525,442 - RR42_RS23145 0.65 -0.0 526,202 + RR42_RS23150 0.35 +0.7 526,286 + RR42_RS23150 0.44 +0.3 526,373 + RR42_RS23150 0.53 -0.0 526,430 + RR42_RS23150 0.58 +0.1 526,431 - RR42_RS23150 0.58 +1.5 526,431 - RR42_RS23150 0.58 -1.5 526,431 - RR42_RS23150 0.58 +1.1 526,431 - RR42_RS23150 0.58 +0.8 526,431 - RR42_RS23150 0.58 +0.9 526,431 - RR42_RS23150 0.58 +0.6 526,574 + RR42_RS23150 0.73 +1.4 526,575 - RR42_RS23150 0.73 -0.1 526,839 + +0.2 526,840 - +0.3 526,856 - +0.0 526,947 + +0.4 526,947 + +0.3 527,057 - RR42_RS23155 0.13 +0.5 527,057 - RR42_RS23155 0.13 -0.4 527,270 + RR42_RS23155 0.31 -0.8 527,288 + RR42_RS23155 0.33 -1.7 527,289 - RR42_RS23155 0.33 -0.1 527,439 + RR42_RS23155 0.45 +0.1 527,440 - RR42_RS23155 0.45 -1.1 527,462 + RR42_RS23155 0.47 -0.2 527,462 + RR42_RS23155 0.47 -0.1 527,592 - RR42_RS23155 0.58 -0.9 527,592 - RR42_RS23155 0.58 +0.1 527,729 + RR42_RS23155 0.70 +0.5 527,756 + RR42_RS23155 0.72 +0.5 527,756 + RR42_RS23155 0.72 +0.3 527,756 + RR42_RS23155 0.72 +0.0 527,757 - RR42_RS23155 0.72 +0.2 527,766 + RR42_RS23155 0.73 +0.2 527,766 + RR42_RS23155 0.73 +0.1 527,766 + RR42_RS23155 0.73 +0.8 527,766 + RR42_RS23155 0.73 +0.0 527,767 - RR42_RS23155 0.73 +1.0
Or see this region's nucleotide sequence