Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22935

Experiment: R2A 23C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22930 and RR42_RS22935 are separated by 53 nucleotidesRR42_RS22935 and RR42_RS22940 are separated by 60 nucleotidesRR42_RS22940 and RR42_RS22945 are separated by 137 nucleotides RR42_RS22930: RR42_RS22930 - cytochrome C peroxidase, at 476,193 to 479,342 _RS22930 RR42_RS22935: RR42_RS22935 - metal transporter, at 479,396 to 480,613 _RS22935 RR42_RS22940: RR42_RS22940 - TetR family transcriptional regulator, at 480,674 to 481,348 _RS22940 RR42_RS22945: RR42_RS22945 - oxidoreductase, at 481,486 to 482,514 _RS22945 Position (kb) 479 480 481Strain fitness (log2 ratio) -2 -1 0 1at 478.500 kb on - strand, within RR42_RS22930at 478.886 kb on + strand, within RR42_RS22930at 478.886 kb on + strand, within RR42_RS22930at 478.887 kb on - strand, within RR42_RS22930at 478.938 kb on + strand, within RR42_RS22930at 479.024 kb on + strand, within RR42_RS22930at 479.025 kb on - strand, within RR42_RS22930at 479.866 kb on - strand, within RR42_RS22935at 480.080 kb on + strand, within RR42_RS22935at 480.080 kb on + strand, within RR42_RS22935at 480.081 kb on - strand, within RR42_RS22935at 480.458 kb on + strand, within RR42_RS22935at 480.661 kb on + strandat 480.819 kb on - strand, within RR42_RS22940at 481.130 kb on - strand, within RR42_RS22940at 481.182 kb on + strand, within RR42_RS22940at 481.183 kb on - strand, within RR42_RS22940

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A 23C
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478,500 - RR42_RS22930 0.73 +0.3
478,886 + RR42_RS22930 0.85 +1.6
478,886 + RR42_RS22930 0.85 +1.4
478,887 - RR42_RS22930 0.86 -1.7
478,938 + RR42_RS22930 0.87 -0.4
479,024 + RR42_RS22930 0.90 +0.1
479,025 - RR42_RS22930 0.90 +0.5
479,866 - RR42_RS22935 0.39 -1.1
480,080 + RR42_RS22935 0.56 -0.8
480,080 + RR42_RS22935 0.56 -2.0
480,081 - RR42_RS22935 0.56 +0.3
480,458 + RR42_RS22935 0.87 -0.5
480,661 + -0.8
480,819 - RR42_RS22940 0.21 -1.9
481,130 - RR42_RS22940 0.68 -0.8
481,182 + RR42_RS22940 0.75 -1.5
481,183 - RR42_RS22940 0.75 -2.1

Or see this region's nucleotide sequence