Experiment: R2A 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22390 and RR42_RS22395 are separated by 312 nucleotides RR42_RS22395 and RR42_RS22400 are separated by 112 nucleotides RR42_RS22400 and RR42_RS22405 are separated by 202 nucleotides
RR42_RS22390: RR42_RS22390 - 3-oxoacyl-ACP reductase, at 359,562 to 360,344
_RS22390
RR42_RS22395: RR42_RS22395 - hypothetical protein, at 360,657 to 361,688
_RS22395
RR42_RS22400: RR42_RS22400 - FMN reductase, at 361,801 to 362,421
_RS22400
RR42_RS22405: RR42_RS22405 - hypothetical protein, at 362,624 to 362,929
_RS22405
Position (kb) 360
361
362 Strain fitness (log2 ratio) -2
-1
0
1 at 359.863 kb on + strand, within RR42_RS22390 at 359.864 kb on - strand, within RR42_RS22390 at 359.864 kb on - strand, within RR42_RS22390 at 359.864 kb on - strand, within RR42_RS22390 at 360.586 kb on + strand at 360.587 kb on - strand at 360.587 kb on - strand at 360.818 kb on + strand, within RR42_RS22395 at 361.153 kb on + strand, within RR42_RS22395 at 361.529 kb on - strand, within RR42_RS22395 at 361.730 kb on - strand at 361.777 kb on - strand at 361.784 kb on + strand at 361.784 kb on + strand at 361.785 kb on - strand at 361.785 kb on - strand at 361.785 kb on - strand at 362.225 kb on + strand, within RR42_RS22400 at 362.225 kb on + strand, within RR42_RS22400 at 362.226 kb on - strand, within RR42_RS22400 at 362.226 kb on - strand, within RR42_RS22400 at 362.226 kb on - strand, within RR42_RS22400 at 362.226 kb on - strand, within RR42_RS22400 at 362.226 kb on - strand, within RR42_RS22400 at 362.226 kb on - strand, within RR42_RS22400 at 362.407 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 23C remove 359,863 + RR42_RS22390 0.38 +0.0 359,864 - RR42_RS22390 0.39 -0.7 359,864 - RR42_RS22390 0.39 -0.2 359,864 - RR42_RS22390 0.39 -0.7 360,586 + -0.0 360,587 - +0.1 360,587 - -0.2 360,818 + RR42_RS22395 0.16 +0.5 361,153 + RR42_RS22395 0.48 +0.7 361,529 - RR42_RS22395 0.84 +0.9 361,730 - +0.0 361,777 - -1.1 361,784 + -0.2 361,784 + -0.1 361,785 - -1.2 361,785 - -0.0 361,785 - -0.2 362,225 + RR42_RS22400 0.68 +0.6 362,225 + RR42_RS22400 0.68 -2.5 362,226 - RR42_RS22400 0.68 +0.6 362,226 - RR42_RS22400 0.68 +0.3 362,226 - RR42_RS22400 0.68 +0.3 362,226 - RR42_RS22400 0.68 +0.0 362,226 - RR42_RS22400 0.68 +0.3 362,226 - RR42_RS22400 0.68 -0.8 362,407 - -0.3
Or see this region's nucleotide sequence