Experiment: R2A 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21795 and RR42_RS21800 overlap by 4 nucleotides RR42_RS21800 and RR42_RS21805 overlap by 4 nucleotides RR42_RS21805 and RR42_RS21810 are separated by 2 nucleotides
RR42_RS21795: RR42_RS21795 - mannosyltransferase, at 219,010 to 219,744
_RS21795
RR42_RS21800: RR42_RS21800 - branched-chain amino acid ABC transporter substrate-binding protein, at 219,741 to 220,499
_RS21800
RR42_RS21805: RR42_RS21805 - branched-chain amino acid ABC transporter permease, at 220,496 to 221,791
_RS21805
RR42_RS21810: RR42_RS21810 - ABC transporter permease, at 221,794 to 222,735
_RS21810
Position (kb) 220
221
222 Strain fitness (log2 ratio) -1
0
1
2 at 219.500 kb on + strand, within RR42_RS21795 at 219.501 kb on - strand, within RR42_RS21795 at 219.501 kb on - strand, within RR42_RS21795 at 219.532 kb on + strand, within RR42_RS21795 at 219.533 kb on - strand, within RR42_RS21795 at 219.622 kb on + strand, within RR42_RS21795 at 219.622 kb on + strand, within RR42_RS21795 at 219.623 kb on - strand, within RR42_RS21795 at 219.727 kb on + strand at 219.766 kb on + strand at 219.767 kb on - strand at 220.046 kb on - strand, within RR42_RS21800 at 220.159 kb on + strand, within RR42_RS21800 at 220.160 kb on - strand, within RR42_RS21800 at 220.226 kb on + strand, within RR42_RS21800 at 220.226 kb on + strand, within RR42_RS21800 at 220.227 kb on - strand, within RR42_RS21800 at 220.767 kb on - strand, within RR42_RS21805 at 220.840 kb on - strand, within RR42_RS21805 at 220.840 kb on - strand, within RR42_RS21805 at 221.031 kb on + strand, within RR42_RS21805 at 221.032 kb on - strand, within RR42_RS21805 at 221.032 kb on - strand, within RR42_RS21805 at 221.079 kb on + strand, within RR42_RS21805 at 221.079 kb on + strand, within RR42_RS21805 at 221.079 kb on + strand, within RR42_RS21805 at 221.256 kb on + strand, within RR42_RS21805 at 221.257 kb on - strand, within RR42_RS21805 at 221.298 kb on + strand, within RR42_RS21805 at 221.299 kb on - strand, within RR42_RS21805 at 221.445 kb on + strand, within RR42_RS21805 at 221.446 kb on - strand, within RR42_RS21805 at 221.446 kb on - strand, within RR42_RS21805 at 221.601 kb on + strand, within RR42_RS21805 at 222.047 kb on - strand, within RR42_RS21810 at 222.047 kb on - strand, within RR42_RS21810 at 222.104 kb on + strand, within RR42_RS21810 at 222.104 kb on + strand, within RR42_RS21810 at 222.105 kb on - strand, within RR42_RS21810 at 222.218 kb on + strand, within RR42_RS21810 at 222.218 kb on + strand, within RR42_RS21810 at 222.219 kb on - strand, within RR42_RS21810 at 222.219 kb on - strand, within RR42_RS21810 at 222.219 kb on - strand, within RR42_RS21810 at 222.270 kb on - strand, within RR42_RS21810 at 222.317 kb on + strand, within RR42_RS21810 at 222.317 kb on + strand, within RR42_RS21810 at 222.317 kb on + strand, within RR42_RS21810 at 222.317 kb on + strand, within RR42_RS21810 at 222.318 kb on - strand, within RR42_RS21810 at 222.327 kb on - strand, within RR42_RS21810 at 222.593 kb on + strand, within RR42_RS21810 at 222.594 kb on - strand, within RR42_RS21810 at 222.608 kb on + strand, within RR42_RS21810 at 222.608 kb on + strand, within RR42_RS21810 at 222.608 kb on + strand, within RR42_RS21810 at 222.609 kb on - strand, within RR42_RS21810 at 222.609 kb on - strand, within RR42_RS21810 at 222.696 kb on - strand at 222.728 kb on + strand at 222.728 kb on + strand at 222.783 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 23C remove 219,500 + RR42_RS21795 0.67 +0.5 219,501 - RR42_RS21795 0.67 -0.2 219,501 - RR42_RS21795 0.67 +0.1 219,532 + RR42_RS21795 0.71 -0.2 219,533 - RR42_RS21795 0.71 -0.1 219,622 + RR42_RS21795 0.83 -0.3 219,622 + RR42_RS21795 0.83 -1.7 219,623 - RR42_RS21795 0.83 -0.3 219,727 + -0.5 219,766 + -0.4 219,767 - -0.4 220,046 - RR42_RS21800 0.40 +0.2 220,159 + RR42_RS21800 0.55 +0.5 220,160 - RR42_RS21800 0.55 +0.4 220,226 + RR42_RS21800 0.64 -0.2 220,226 + RR42_RS21800 0.64 -0.6 220,227 - RR42_RS21800 0.64 +0.6 220,767 - RR42_RS21805 0.21 -0.9 220,840 - RR42_RS21805 0.27 +1.8 220,840 - RR42_RS21805 0.27 +0.0 221,031 + RR42_RS21805 0.41 -1.3 221,032 - RR42_RS21805 0.41 +0.8 221,032 - RR42_RS21805 0.41 -0.2 221,079 + RR42_RS21805 0.45 +1.2 221,079 + RR42_RS21805 0.45 +0.3 221,079 + RR42_RS21805 0.45 -1.5 221,256 + RR42_RS21805 0.59 -0.4 221,257 - RR42_RS21805 0.59 +0.1 221,298 + RR42_RS21805 0.62 -0.5 221,299 - RR42_RS21805 0.62 -0.1 221,445 + RR42_RS21805 0.73 +0.4 221,446 - RR42_RS21805 0.73 +0.6 221,446 - RR42_RS21805 0.73 -0.4 221,601 + RR42_RS21805 0.85 -0.6 222,047 - RR42_RS21810 0.27 -0.9 222,047 - RR42_RS21810 0.27 -0.1 222,104 + RR42_RS21810 0.33 +0.6 222,104 + RR42_RS21810 0.33 +2.2 222,105 - RR42_RS21810 0.33 +0.0 222,218 + RR42_RS21810 0.45 -0.7 222,218 + RR42_RS21810 0.45 -0.8 222,219 - RR42_RS21810 0.45 +0.8 222,219 - RR42_RS21810 0.45 +1.2 222,219 - RR42_RS21810 0.45 -0.7 222,270 - RR42_RS21810 0.51 +0.5 222,317 + RR42_RS21810 0.56 +0.2 222,317 + RR42_RS21810 0.56 +0.3 222,317 + RR42_RS21810 0.56 +0.8 222,317 + RR42_RS21810 0.56 +1.2 222,318 - RR42_RS21810 0.56 +0.6 222,327 - RR42_RS21810 0.57 -0.4 222,593 + RR42_RS21810 0.85 -0.7 222,594 - RR42_RS21810 0.85 -0.1 222,608 + RR42_RS21810 0.86 +2.2 222,608 + RR42_RS21810 0.86 +0.9 222,608 + RR42_RS21810 0.86 +0.5 222,609 - RR42_RS21810 0.87 +0.6 222,609 - RR42_RS21810 0.87 -0.2 222,696 - +0.3 222,728 + +0.8 222,728 + -0.5 222,783 - -0.1
Or see this region's nucleotide sequence