Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19720

Experiment: R2A 23C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS19715 and RR42_RS19720 are separated by 28 nucleotidesRR42_RS19720 and RR42_RS19725 are separated by 187 nucleotides RR42_RS19715: RR42_RS19715 - flavocytochrome C, at 4,257,873 to 4,259,135 _RS19715 RR42_RS19720: RR42_RS19720 - cytochrome C553, at 4,259,164 to 4,259,502 _RS19720 RR42_RS19725: RR42_RS19725 - hypothetical protein, at 4,259,690 to 4,260,478 _RS19725 Position (kb) 4259 4260Strain fitness (log2 ratio) -2 -1 0 1at 4258.206 kb on - strand, within RR42_RS19715at 4258.399 kb on + strand, within RR42_RS19715at 4258.400 kb on - strand, within RR42_RS19715at 4258.400 kb on - strand, within RR42_RS19715at 4258.430 kb on - strand, within RR42_RS19715at 4258.794 kb on + strand, within RR42_RS19715at 4258.874 kb on - strand, within RR42_RS19715at 4259.038 kb on - strandat 4259.217 kb on - strand, within RR42_RS19720at 4259.217 kb on - strand, within RR42_RS19720at 4259.217 kb on - strand, within RR42_RS19720at 4259.895 kb on + strand, within RR42_RS19725at 4259.895 kb on + strand, within RR42_RS19725at 4259.895 kb on + strand, within RR42_RS19725at 4259.895 kb on + strand, within RR42_RS19725at 4260.167 kb on + strand, within RR42_RS19725at 4260.167 kb on + strand, within RR42_RS19725at 4260.167 kb on + strand, within RR42_RS19725at 4260.167 kb on + strand, within RR42_RS19725at 4260.167 kb on + strand, within RR42_RS19725at 4260.168 kb on - strand, within RR42_RS19725at 4260.168 kb on - strand, within RR42_RS19725at 4260.168 kb on - strand, within RR42_RS19725at 4260.168 kb on - strand, within RR42_RS19725at 4260.171 kb on + strand, within RR42_RS19725at 4260.171 kb on + strand, within RR42_RS19725at 4260.171 kb on + strand, within RR42_RS19725at 4260.172 kb on - strand, within RR42_RS19725at 4260.172 kb on - strand, within RR42_RS19725at 4260.172 kb on - strand, within RR42_RS19725

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A 23C
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4,258,206 - RR42_RS19715 0.26 -0.2
4,258,399 + RR42_RS19715 0.42 -0.5
4,258,400 - RR42_RS19715 0.42 -1.1
4,258,400 - RR42_RS19715 0.42 +0.1
4,258,430 - RR42_RS19715 0.44 +0.3
4,258,794 + RR42_RS19715 0.73 -0.3
4,258,874 - RR42_RS19715 0.79 -0.7
4,259,038 - +1.0
4,259,217 - RR42_RS19720 0.16 +1.3
4,259,217 - RR42_RS19720 0.16 -1.5
4,259,217 - RR42_RS19720 0.16 +0.4
4,259,895 + RR42_RS19725 0.26 -0.0
4,259,895 + RR42_RS19725 0.26 +0.7
4,259,895 + RR42_RS19725 0.26 +0.0
4,259,895 + RR42_RS19725 0.26 -0.2
4,260,167 + RR42_RS19725 0.60 -0.1
4,260,167 + RR42_RS19725 0.60 -1.1
4,260,167 + RR42_RS19725 0.60 -0.9
4,260,167 + RR42_RS19725 0.60 -1.0
4,260,167 + RR42_RS19725 0.60 +0.1
4,260,168 - RR42_RS19725 0.61 -2.2
4,260,168 - RR42_RS19725 0.61 -0.5
4,260,168 - RR42_RS19725 0.61 -0.1
4,260,168 - RR42_RS19725 0.61 -1.2
4,260,171 + RR42_RS19725 0.61 +0.1
4,260,171 + RR42_RS19725 0.61 +0.7
4,260,171 + RR42_RS19725 0.61 -0.1
4,260,172 - RR42_RS19725 0.61 -0.7
4,260,172 - RR42_RS19725 0.61 +0.4
4,260,172 - RR42_RS19725 0.61 -0.5

Or see this region's nucleotide sequence