Experiment: R2A 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS14805 and RR42_RS14810 are separated by 88 nucleotides RR42_RS14810 and RR42_RS14815 are separated by 540 nucleotides
RR42_RS14805: RR42_RS14805 - glutamyl-Q tRNA(Asp) ligase, at 3,189,200 to 3,190,141
_RS14805
RR42_RS14810: RR42_RS14810 - DEAD/DEAH box helicase, at 3,190,230 to 3,191,720
_RS14810
RR42_RS14815: RR42_RS14815 - hypothetical protein, at 3,192,261 to 3,192,947
_RS14815
Position (kb)
3190
3191
3192 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3189.230 kb on + strand at 3189.230 kb on + strand at 3189.468 kb on - strand, within RR42_RS14805 at 3189.510 kb on - strand, within RR42_RS14805 at 3189.510 kb on - strand, within RR42_RS14805 at 3189.765 kb on - strand, within RR42_RS14805 at 3189.893 kb on + strand, within RR42_RS14805 at 3190.363 kb on + strand at 3190.363 kb on + strand at 3190.363 kb on + strand at 3190.364 kb on - strand at 3190.681 kb on + strand, within RR42_RS14810 at 3190.681 kb on + strand, within RR42_RS14810 at 3190.682 kb on - strand, within RR42_RS14810 at 3190.682 kb on - strand, within RR42_RS14810 at 3190.682 kb on - strand, within RR42_RS14810 at 3191.404 kb on + strand, within RR42_RS14810 at 3191.624 kb on - strand at 3191.624 kb on - strand at 3191.803 kb on + strand at 3191.804 kb on - strand at 3192.136 kb on + strand at 3192.142 kb on - strand at 3192.189 kb on - strand at 3192.210 kb on - strand at 3192.237 kb on - strand at 3192.369 kb on + strand, within RR42_RS14815
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 23C remove 3,189,230 + -0.6 3,189,230 + -0.8 3,189,468 - RR42_RS14805 0.28 +3.0 3,189,510 - RR42_RS14805 0.33 +0.2 3,189,510 - RR42_RS14805 0.33 -0.6 3,189,765 - RR42_RS14805 0.60 +0.2 3,189,893 + RR42_RS14805 0.74 +0.4 3,190,363 + -0.4 3,190,363 + -0.1 3,190,363 + +0.5 3,190,364 - -0.2 3,190,681 + RR42_RS14810 0.30 -0.7 3,190,681 + RR42_RS14810 0.30 -1.5 3,190,682 - RR42_RS14810 0.30 -0.5 3,190,682 - RR42_RS14810 0.30 -1.0 3,190,682 - RR42_RS14810 0.30 -0.4 3,191,404 + RR42_RS14810 0.79 +0.5 3,191,624 - -0.6 3,191,624 - -0.2 3,191,803 + +0.5 3,191,804 - -0.0 3,192,136 + +1.2 3,192,142 - +0.0 3,192,189 - -1.0 3,192,210 - +0.5 3,192,237 - -0.3 3,192,369 + RR42_RS14815 0.16 +0.5
Or see this region's nucleotide sequence