Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14810

Experiment: R2A 23C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS14805 and RR42_RS14810 are separated by 88 nucleotidesRR42_RS14810 and RR42_RS14815 are separated by 540 nucleotides RR42_RS14805: RR42_RS14805 - glutamyl-Q tRNA(Asp) ligase, at 3,189,200 to 3,190,141 _RS14805 RR42_RS14810: RR42_RS14810 - DEAD/DEAH box helicase, at 3,190,230 to 3,191,720 _RS14810 RR42_RS14815: RR42_RS14815 - hypothetical protein, at 3,192,261 to 3,192,947 _RS14815 Position (kb) 3190 3191 3192Strain fitness (log2 ratio) -1 0 1 2 3at 3189.230 kb on + strandat 3189.230 kb on + strandat 3189.468 kb on - strand, within RR42_RS14805at 3189.510 kb on - strand, within RR42_RS14805at 3189.510 kb on - strand, within RR42_RS14805at 3189.765 kb on - strand, within RR42_RS14805at 3189.893 kb on + strand, within RR42_RS14805at 3190.363 kb on + strandat 3190.363 kb on + strandat 3190.363 kb on + strandat 3190.364 kb on - strandat 3190.681 kb on + strand, within RR42_RS14810at 3190.681 kb on + strand, within RR42_RS14810at 3190.682 kb on - strand, within RR42_RS14810at 3190.682 kb on - strand, within RR42_RS14810at 3190.682 kb on - strand, within RR42_RS14810at 3191.404 kb on + strand, within RR42_RS14810at 3191.624 kb on - strandat 3191.624 kb on - strandat 3191.803 kb on + strandat 3191.804 kb on - strandat 3192.136 kb on + strandat 3192.142 kb on - strandat 3192.189 kb on - strandat 3192.210 kb on - strandat 3192.237 kb on - strandat 3192.369 kb on + strand, within RR42_RS14815

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A 23C
remove
3,189,230 + -0.6
3,189,230 + -0.8
3,189,468 - RR42_RS14805 0.28 +3.0
3,189,510 - RR42_RS14805 0.33 +0.2
3,189,510 - RR42_RS14805 0.33 -0.6
3,189,765 - RR42_RS14805 0.60 +0.2
3,189,893 + RR42_RS14805 0.74 +0.4
3,190,363 + -0.4
3,190,363 + -0.1
3,190,363 + +0.5
3,190,364 - -0.2
3,190,681 + RR42_RS14810 0.30 -0.7
3,190,681 + RR42_RS14810 0.30 -1.5
3,190,682 - RR42_RS14810 0.30 -0.5
3,190,682 - RR42_RS14810 0.30 -1.0
3,190,682 - RR42_RS14810 0.30 -0.4
3,191,404 + RR42_RS14810 0.79 +0.5
3,191,624 - -0.6
3,191,624 - -0.2
3,191,803 + +0.5
3,191,804 - -0.0
3,192,136 + +1.2
3,192,142 - +0.0
3,192,189 - -1.0
3,192,210 - +0.5
3,192,237 - -0.3
3,192,369 + RR42_RS14815 0.16 +0.5

Or see this region's nucleotide sequence