Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07180

Experiment: R2A 23C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS07160 and RR42_RS07165 are separated by 1 nucleotidesRR42_RS07165 and RR42_RS07170 are separated by 21 nucleotidesRR42_RS07170 and RR42_RS07175 overlap by 4 nucleotidesRR42_RS07175 and RR42_RS07180 overlap by 1 nucleotidesRR42_RS07180 and RR42_RS07185 are separated by 17 nucleotidesRR42_RS07185 and RR42_RS07190 are separated by 177 nucleotidesRR42_RS07190 and RR42_RS07195 are separated by 1 nucleotides RR42_RS07160: RR42_RS07160 - hypothetical protein, at 1,534,465 to 1,535,247 _RS07160 RR42_RS07165: RR42_RS07165 - hypothetical protein, at 1,535,249 to 1,535,467 _RS07165 RR42_RS07170: RR42_RS07170 - hypothetical protein, at 1,535,489 to 1,535,800 _RS07170 RR42_RS07175: RR42_RS07175 - hypothetical protein, at 1,535,797 to 1,536,120 _RS07175 RR42_RS07180: RR42_RS07180 - hypothetical protein, at 1,536,120 to 1,536,788 _RS07180 RR42_RS07185: RR42_RS07185 - hypothetical protein, at 1,536,806 to 1,537,195 _RS07185 RR42_RS07190: RR42_RS07190 - hypothetical protein, at 1,537,373 to 1,537,642 _RS07190 RR42_RS07195: RR42_RS07195 - hypothetical protein, at 1,537,644 to 1,538,042 _RS07195 Position (kb) 1536 1537Strain fitness (log2 ratio) -1 0 1at 1535.552 kb on - strand, within RR42_RS07170at 1535.552 kb on - strand, within RR42_RS07170at 1535.552 kb on - strand, within RR42_RS07170at 1535.647 kb on + strand, within RR42_RS07170at 1536.098 kb on + strandat 1536.152 kb on - strandat 1536.152 kb on - strandat 1536.152 kb on - strandat 1536.201 kb on + strand, within RR42_RS07180at 1536.234 kb on + strand, within RR42_RS07180at 1536.606 kb on - strand, within RR42_RS07180at 1536.606 kb on - strand, within RR42_RS07180at 1536.696 kb on + strand, within RR42_RS07180at 1536.762 kb on + strandat 1536.911 kb on + strand, within RR42_RS07185at 1536.912 kb on - strand, within RR42_RS07185at 1536.966 kb on + strand, within RR42_RS07185at 1537.052 kb on + strand, within RR42_RS07185at 1537.052 kb on + strand, within RR42_RS07185at 1537.052 kb on + strand, within RR42_RS07185at 1537.249 kb on - strandat 1537.265 kb on + strandat 1537.266 kb on - strandat 1537.304 kb on + strandat 1537.305 kb on - strandat 1537.305 kb on - strandat 1537.342 kb on + strandat 1537.343 kb on - strandat 1537.343 kb on - strandat 1537.402 kb on + strand, within RR42_RS07190at 1537.402 kb on + strand, within RR42_RS07190at 1537.402 kb on + strand, within RR42_RS07190at 1537.403 kb on - strand, within RR42_RS07190at 1537.403 kb on - strand, within RR42_RS07190at 1537.403 kb on - strand, within RR42_RS07190at 1537.403 kb on - strand, within RR42_RS07190at 1537.403 kb on - strand, within RR42_RS07190at 1537.403 kb on - strand, within RR42_RS07190at 1537.432 kb on - strand, within RR42_RS07190at 1537.490 kb on + strand, within RR42_RS07190at 1537.504 kb on - strand, within RR42_RS07190at 1537.539 kb on - strand, within RR42_RS07190at 1537.620 kb on + strandat 1537.620 kb on + strandat 1537.621 kb on - strandat 1537.621 kb on - strandat 1537.621 kb on - strandat 1537.653 kb on - strandat 1537.766 kb on + strand, within RR42_RS07195at 1537.767 kb on - strand, within RR42_RS07195

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A 23C
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1,535,552 - RR42_RS07170 0.20 +0.1
1,535,552 - RR42_RS07170 0.20 +0.4
1,535,552 - RR42_RS07170 0.20 +1.2
1,535,647 + RR42_RS07170 0.51 +0.1
1,536,098 + +0.4
1,536,152 - +0.4
1,536,152 - -0.4
1,536,152 - -0.7
1,536,201 + RR42_RS07180 0.12 -0.9
1,536,234 + RR42_RS07180 0.17 +0.8
1,536,606 - RR42_RS07180 0.73 -0.5
1,536,606 - RR42_RS07180 0.73 -0.7
1,536,696 + RR42_RS07180 0.86 -0.7
1,536,762 + +1.3
1,536,911 + RR42_RS07185 0.27 +0.1
1,536,912 - RR42_RS07185 0.27 -0.2
1,536,966 + RR42_RS07185 0.41 +0.8
1,537,052 + RR42_RS07185 0.63 +0.2
1,537,052 + RR42_RS07185 0.63 -0.5
1,537,052 + RR42_RS07185 0.63 -0.6
1,537,249 - -0.3
1,537,265 + -1.7
1,537,266 - +1.3
1,537,304 + +0.8
1,537,305 - -1.0
1,537,305 - +0.1
1,537,342 + +0.1
1,537,343 - +0.1
1,537,343 - +0.2
1,537,402 + RR42_RS07190 0.11 +0.5
1,537,402 + RR42_RS07190 0.11 +0.4
1,537,402 + RR42_RS07190 0.11 -0.1
1,537,403 - RR42_RS07190 0.11 -0.0
1,537,403 - RR42_RS07190 0.11 -0.3
1,537,403 - RR42_RS07190 0.11 +0.3
1,537,403 - RR42_RS07190 0.11 -0.6
1,537,403 - RR42_RS07190 0.11 -0.0
1,537,403 - RR42_RS07190 0.11 +0.4
1,537,432 - RR42_RS07190 0.22 +0.8
1,537,490 + RR42_RS07190 0.43 -0.4
1,537,504 - RR42_RS07190 0.49 +0.5
1,537,539 - RR42_RS07190 0.61 +0.9
1,537,620 + +0.3
1,537,620 + -0.3
1,537,621 - -0.2
1,537,621 - -0.0
1,537,621 - +0.5
1,537,653 - -0.6
1,537,766 + RR42_RS07195 0.31 +0.5
1,537,767 - RR42_RS07195 0.31 -1.0

Or see this region's nucleotide sequence