Experiment: R2A 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS06835 and RR42_RS06845 are separated by 403 nucleotides RR42_RS06845 and RR42_RS06850 overlap by 8 nucleotides
RR42_RS06835: RR42_RS06835 - recombinase RdgC, at 1,477,381 to 1,478,319
_RS06835
RR42_RS06845: RR42_RS06845 - hypothetical protein, at 1,478,723 to 1,479,019
_RS06845
RR42_RS06850: RR42_RS06850 - hypothetical protein, at 1,479,012 to 1,479,467
_RS06850
Position (kb)
1479
1480 Strain fitness (log2 ratio)
-1
0
1
2 at 1478.023 kb on - strand, within RR42_RS06835 at 1478.316 kb on - strand at 1478.316 kb on - strand at 1478.316 kb on - strand at 1478.481 kb on + strand at 1478.514 kb on + strand at 1478.515 kb on - strand at 1478.515 kb on - strand at 1478.515 kb on - strand at 1478.615 kb on + strand at 1478.616 kb on - strand at 1478.616 kb on - strand at 1478.796 kb on + strand, within RR42_RS06845 at 1478.803 kb on + strand, within RR42_RS06845 at 1478.804 kb on - strand, within RR42_RS06845 at 1478.804 kb on - strand, within RR42_RS06845 at 1478.804 kb on - strand, within RR42_RS06845 at 1478.804 kb on - strand, within RR42_RS06845 at 1478.804 kb on - strand, within RR42_RS06845 at 1478.889 kb on - strand, within RR42_RS06845 at 1479.124 kb on - strand, within RR42_RS06850 at 1479.230 kb on + strand, within RR42_RS06850 at 1479.342 kb on + strand, within RR42_RS06850 at 1479.343 kb on - strand, within RR42_RS06850 at 1479.678 kb on + strand at 1479.852 kb on + strand at 1479.853 kb on - strand at 1480.119 kb on + strand at 1480.142 kb on - strand at 1480.142 kb on - strand at 1480.142 kb on - strand at 1480.153 kb on + strand at 1480.153 kb on + strand at 1480.154 kb on - strand at 1480.173 kb on + strand at 1480.335 kb on + strand at 1480.414 kb on - strand at 1480.414 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 23C remove 1,478,023 - RR42_RS06835 0.68 -0.4 1,478,316 - -0.3 1,478,316 - -0.3 1,478,316 - +0.2 1,478,481 + +2.4 1,478,514 + +2.5 1,478,515 - -1.0 1,478,515 - -0.6 1,478,515 - -0.2 1,478,615 + +2.1 1,478,616 - +0.2 1,478,616 - -0.2 1,478,796 + RR42_RS06845 0.25 +2.1 1,478,803 + RR42_RS06845 0.27 +2.2 1,478,804 - RR42_RS06845 0.27 -0.8 1,478,804 - RR42_RS06845 0.27 -0.1 1,478,804 - RR42_RS06845 0.27 +0.4 1,478,804 - RR42_RS06845 0.27 -0.5 1,478,804 - RR42_RS06845 0.27 +0.8 1,478,889 - RR42_RS06845 0.56 -0.2 1,479,124 - RR42_RS06850 0.25 +1.3 1,479,230 + RR42_RS06850 0.48 +0.6 1,479,342 + RR42_RS06850 0.72 -0.2 1,479,343 - RR42_RS06850 0.73 +1.2 1,479,678 + +0.5 1,479,852 + +0.1 1,479,853 - +0.4 1,480,119 + +0.4 1,480,142 - -0.1 1,480,142 - +0.5 1,480,142 - +0.8 1,480,153 + -0.8 1,480,153 + +0.7 1,480,154 - +0.8 1,480,173 + -1.0 1,480,335 + +1.0 1,480,414 - +0.3 1,480,414 - +1.1
Or see this region's nucleotide sequence