Experiment: R2A 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04200 and RR42_RS04205 are separated by 66 nucleotides RR42_RS04205 and RR42_RS04210 are separated by 173 nucleotides
RR42_RS04200: RR42_RS04200 - peptidase M48, at 929,729 to 930,889
_RS04200
RR42_RS04205: RR42_RS04205 - glycine cleavage system regulatory protein, at 930,956 to 931,843
_RS04205
RR42_RS04210: RR42_RS04210 - membrane protein, at 932,017 to 933,306
_RS04210
Position (kb) 930
931
932 Strain fitness (log2 ratio) -2
-1
0
1
2 at 930.086 kb on + strand, within RR42_RS04200 at 930.092 kb on + strand, within RR42_RS04200 at 930.092 kb on + strand, within RR42_RS04200 at 930.093 kb on - strand, within RR42_RS04200 at 930.509 kb on + strand, within RR42_RS04200 at 930.590 kb on + strand, within RR42_RS04200 at 930.591 kb on - strand, within RR42_RS04200 at 930.887 kb on + strand at 930.887 kb on + strand at 930.887 kb on + strand at 930.888 kb on - strand at 930.888 kb on - strand at 930.888 kb on - strand at 930.888 kb on - strand at 930.910 kb on + strand at 930.910 kb on + strand at 930.910 kb on + strand at 930.910 kb on + strand at 930.911 kb on - strand at 930.911 kb on - strand at 930.911 kb on - strand at 930.976 kb on + strand at 930.976 kb on + strand at 930.977 kb on - strand at 930.977 kb on - strand at 930.977 kb on - strand at 931.032 kb on + strand at 931.033 kb on - strand at 931.033 kb on - strand at 931.093 kb on - strand, within RR42_RS04205 at 931.093 kb on - strand, within RR42_RS04205 at 931.093 kb on - strand, within RR42_RS04205 at 931.411 kb on - strand, within RR42_RS04205 at 931.954 kb on - strand at 931.972 kb on + strand at 932.033 kb on + strand at 932.033 kb on + strand at 932.033 kb on + strand at 932.146 kb on + strand, within RR42_RS04210 at 932.146 kb on + strand, within RR42_RS04210 at 932.146 kb on + strand, within RR42_RS04210 at 932.147 kb on - strand, within RR42_RS04210 at 932.147 kb on - strand, within RR42_RS04210 at 932.148 kb on + strand, within RR42_RS04210 at 932.148 kb on + strand, within RR42_RS04210 at 932.148 kb on + strand, within RR42_RS04210 at 932.149 kb on - strand, within RR42_RS04210 at 932.239 kb on + strand, within RR42_RS04210 at 932.239 kb on + strand, within RR42_RS04210 at 932.240 kb on - strand, within RR42_RS04210 at 932.352 kb on + strand, within RR42_RS04210 at 932.581 kb on + strand, within RR42_RS04210 at 932.581 kb on + strand, within RR42_RS04210 at 932.809 kb on + strand, within RR42_RS04210 at 932.809 kb on + strand, within RR42_RS04210
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 23C remove 930,086 + RR42_RS04200 0.31 +0.0 930,092 + RR42_RS04200 0.31 -0.3 930,092 + RR42_RS04200 0.31 +0.0 930,093 - RR42_RS04200 0.31 +0.2 930,509 + RR42_RS04200 0.67 -0.3 930,590 + RR42_RS04200 0.74 -0.7 930,591 - RR42_RS04200 0.74 +0.1 930,887 + +0.2 930,887 + -0.2 930,887 + -1.6 930,888 - +0.1 930,888 - +0.4 930,888 - -1.6 930,888 - -0.8 930,910 + -0.8 930,910 + -0.9 930,910 + +0.7 930,910 + -1.2 930,911 - -1.4 930,911 - +2.0 930,911 - +0.3 930,976 + +0.8 930,976 + +1.0 930,977 - -0.5 930,977 - -0.6 930,977 - +0.0 931,032 + +0.7 931,033 - -0.5 931,033 - -0.0 931,093 - RR42_RS04205 0.15 -0.4 931,093 - RR42_RS04205 0.15 -0.8 931,093 - RR42_RS04205 0.15 -2.3 931,411 - RR42_RS04205 0.51 -1.6 931,954 - -0.5 931,972 + -1.4 932,033 + -0.5 932,033 + -0.2 932,033 + -2.0 932,146 + RR42_RS04210 0.10 +0.2 932,146 + RR42_RS04210 0.10 +0.8 932,146 + RR42_RS04210 0.10 +2.0 932,147 - RR42_RS04210 0.10 +0.3 932,147 - RR42_RS04210 0.10 -1.0 932,148 + RR42_RS04210 0.10 +0.1 932,148 + RR42_RS04210 0.10 -0.8 932,148 + RR42_RS04210 0.10 +0.0 932,149 - RR42_RS04210 0.10 -1.1 932,239 + RR42_RS04210 0.17 +0.6 932,239 + RR42_RS04210 0.17 +0.2 932,240 - RR42_RS04210 0.17 -0.1 932,352 + RR42_RS04210 0.26 -0.6 932,581 + RR42_RS04210 0.44 +0.9 932,581 + RR42_RS04210 0.44 -0.7 932,809 + RR42_RS04210 0.61 -0.6 932,809 + RR42_RS04210 0.61 -2.1
Or see this region's nucleotide sequence