Experiment: R2A 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03320 and RR42_RS03325 overlap by 4 nucleotides RR42_RS03325 and RR42_RS03330 are separated by 211 nucleotides RR42_RS03330 and RR42_RS03335 are separated by 64 nucleotides
RR42_RS03320: RR42_RS03320 - transcriptional regulator, at 739,742 to 740,473
_RS03320
RR42_RS03325: RR42_RS03325 - membrane protein, at 740,470 to 741,747
_RS03325
RR42_RS03330: RR42_RS03330 - GYD family protein, at 741,959 to 742,252
_RS03330
RR42_RS03335: RR42_RS03335 - glycerol-3-phosphate acyltransferase, at 742,317 to 742,934
_RS03335
Position (kb) 740
741
742 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 739.481 kb on + strand at 739.481 kb on + strand at 739.482 kb on - strand at 739.482 kb on - strand at 739.482 kb on - strand at 739.482 kb on - strand at 739.489 kb on - strand at 739.601 kb on + strand at 739.601 kb on + strand at 739.602 kb on - strand at 739.612 kb on + strand at 739.612 kb on + strand at 739.612 kb on + strand at 739.613 kb on - strand at 739.613 kb on - strand at 739.668 kb on + strand at 739.686 kb on - strand at 739.726 kb on + strand at 739.727 kb on - strand at 739.730 kb on + strand at 739.730 kb on + strand at 739.730 kb on + strand at 739.730 kb on + strand at 739.731 kb on - strand at 739.731 kb on - strand at 739.741 kb on + strand at 739.742 kb on - strand at 740.051 kb on + strand, within RR42_RS03320 at 740.051 kb on + strand, within RR42_RS03320 at 740.052 kb on - strand, within RR42_RS03320 at 740.313 kb on - strand, within RR42_RS03320 at 740.313 kb on - strand, within RR42_RS03320 at 740.406 kb on - strand at 740.406 kb on - strand at 740.434 kb on + strand at 740.434 kb on + strand at 740.435 kb on - strand at 740.435 kb on - strand at 740.435 kb on - strand at 740.786 kb on + strand, within RR42_RS03325 at 740.927 kb on + strand, within RR42_RS03325 at 740.927 kb on + strand, within RR42_RS03325 at 741.124 kb on - strand, within RR42_RS03325 at 741.452 kb on - strand, within RR42_RS03325 at 741.452 kb on - strand, within RR42_RS03325 at 741.452 kb on - strand, within RR42_RS03325 at 741.457 kb on + strand, within RR42_RS03325 at 741.458 kb on - strand at 741.843 kb on - strand at 741.843 kb on - strand at 741.864 kb on + strand at 741.882 kb on - strand at 741.899 kb on + strand at 741.900 kb on - strand at 741.982 kb on + strand at 741.982 kb on + strand at 741.982 kb on + strand at 741.983 kb on - strand at 742.103 kb on + strand, within RR42_RS03330 at 742.104 kb on - strand, within RR42_RS03330 at 742.104 kb on - strand, within RR42_RS03330 at 742.104 kb on - strand, within RR42_RS03330 at 742.114 kb on - strand, within RR42_RS03330 at 742.124 kb on - strand, within RR42_RS03330 at 742.124 kb on - strand, within RR42_RS03330 at 742.250 kb on + strand at 742.251 kb on - strand at 742.254 kb on + strand at 742.254 kb on + strand at 742.254 kb on + strand at 742.254 kb on + strand at 742.254 kb on + strand at 742.254 kb on + strand at 742.255 kb on - strand at 742.255 kb on - strand at 742.255 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 23C remove 739,481 + +0.8 739,481 + -1.6 739,482 - +0.5 739,482 - +2.4 739,482 - +1.4 739,482 - -0.5 739,489 - +0.9 739,601 + -1.5 739,601 + -0.1 739,602 - -1.8 739,612 + -1.3 739,612 + -1.7 739,612 + +0.4 739,613 - +0.3 739,613 - -1.5 739,668 + -0.2 739,686 - -2.5 739,726 + -1.1 739,727 - -0.3 739,730 + -0.2 739,730 + -0.7 739,730 + -1.1 739,730 + -1.1 739,731 - -0.3 739,731 - +0.1 739,741 + -0.2 739,742 - +0.9 740,051 + RR42_RS03320 0.42 +0.5 740,051 + RR42_RS03320 0.42 -0.5 740,052 - RR42_RS03320 0.42 -0.2 740,313 - RR42_RS03320 0.78 -1.9 740,313 - RR42_RS03320 0.78 +0.5 740,406 - +1.0 740,406 - -0.9 740,434 + -1.2 740,434 + -1.5 740,435 - -2.3 740,435 - -1.1 740,435 - -1.0 740,786 + RR42_RS03325 0.25 -0.5 740,927 + RR42_RS03325 0.36 -0.2 740,927 + RR42_RS03325 0.36 -0.7 741,124 - RR42_RS03325 0.51 -0.2 741,452 - RR42_RS03325 0.77 -1.0 741,452 - RR42_RS03325 0.77 -0.5 741,452 - RR42_RS03325 0.77 -0.6 741,457 + RR42_RS03325 0.77 +0.1 741,458 - +1.1 741,843 - +0.5 741,843 - +0.1 741,864 + -1.2 741,882 - -0.3 741,899 + -0.6 741,900 - -0.5 741,982 + -0.6 741,982 + -0.1 741,982 + -1.9 741,983 - -0.5 742,103 + RR42_RS03330 0.49 -0.2 742,104 - RR42_RS03330 0.49 -0.1 742,104 - RR42_RS03330 0.49 -1.0 742,104 - RR42_RS03330 0.49 -1.2 742,114 - RR42_RS03330 0.53 -1.5 742,124 - RR42_RS03330 0.56 -0.8 742,124 - RR42_RS03330 0.56 +0.4 742,250 + -0.5 742,251 - -0.2 742,254 + +0.4 742,254 + -0.7 742,254 + -0.0 742,254 + -0.5 742,254 + +0.0 742,254 + -0.1 742,255 - +0.4 742,255 - -0.8 742,255 - -2.8
Or see this region's nucleotide sequence