Experiment: R2A 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03265 and RR42_RS03270 are separated by 354 nucleotides RR42_RS03270 and RR42_RS03275 are separated by 94 nucleotides RR42_RS03275 and RR42_RS03280 are separated by 117 nucleotides
RR42_RS03265: RR42_RS03265 - hypothetical protein, at 723,233 to 724,513
_RS03265
RR42_RS03270: RR42_RS03270 - membrane protein, at 724,868 to 725,077
_RS03270
RR42_RS03275: RR42_RS03275 - membrane protein, at 725,172 to 725,642
_RS03275
RR42_RS03280: RR42_RS03280 - LysR family transcriptional regulator, at 725,760 to 726,665
_RS03280
Position (kb) 724
725
726 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 723.918 kb on + strand, within RR42_RS03265 at 723.918 kb on + strand, within RR42_RS03265 at 723.919 kb on - strand, within RR42_RS03265 at 723.988 kb on - strand, within RR42_RS03265 at 724.138 kb on + strand, within RR42_RS03265 at 724.139 kb on - strand, within RR42_RS03265 at 724.293 kb on + strand, within RR42_RS03265 at 724.293 kb on + strand, within RR42_RS03265 at 724.293 kb on + strand, within RR42_RS03265 at 724.294 kb on - strand, within RR42_RS03265 at 724.294 kb on - strand, within RR42_RS03265 at 724.294 kb on - strand, within RR42_RS03265 at 724.297 kb on - strand, within RR42_RS03265 at 724.442 kb on + strand at 724.442 kb on + strand at 724.442 kb on + strand at 724.755 kb on + strand at 724.755 kb on + strand at 724.756 kb on - strand at 724.756 kb on - strand at 724.756 kb on - strand at 724.764 kb on + strand at 724.764 kb on + strand at 724.765 kb on - strand at 724.765 kb on - strand at 724.765 kb on - strand at 724.765 kb on - strand at 724.874 kb on - strand at 724.879 kb on - strand at 724.888 kb on + strand at 724.888 kb on + strand at 725.166 kb on + strand at 725.166 kb on + strand at 725.167 kb on - strand at 725.167 kb on - strand at 725.167 kb on - strand at 725.167 kb on - strand at 725.187 kb on + strand at 725.281 kb on + strand, within RR42_RS03275 at 725.290 kb on + strand, within RR42_RS03275 at 725.290 kb on + strand, within RR42_RS03275 at 725.290 kb on + strand, within RR42_RS03275 at 725.290 kb on + strand, within RR42_RS03275 at 725.290 kb on + strand, within RR42_RS03275 at 725.290 kb on + strand, within RR42_RS03275 at 725.291 kb on - strand, within RR42_RS03275 at 725.291 kb on - strand, within RR42_RS03275 at 725.291 kb on - strand, within RR42_RS03275 at 725.479 kb on + strand, within RR42_RS03275 at 725.480 kb on - strand, within RR42_RS03275 at 725.612 kb on + strand at 725.613 kb on - strand at 725.667 kb on + strand at 725.667 kb on + strand at 725.667 kb on + strand at 725.667 kb on + strand at 725.668 kb on - strand at 725.700 kb on - strand at 726.067 kb on - strand, within RR42_RS03280
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 23C remove 723,918 + RR42_RS03265 0.53 -0.4 723,918 + RR42_RS03265 0.53 +0.1 723,919 - RR42_RS03265 0.54 -1.6 723,988 - RR42_RS03265 0.59 -0.4 724,138 + RR42_RS03265 0.71 -0.0 724,139 - RR42_RS03265 0.71 -0.1 724,293 + RR42_RS03265 0.83 +1.1 724,293 + RR42_RS03265 0.83 -0.9 724,293 + RR42_RS03265 0.83 -0.0 724,294 - RR42_RS03265 0.83 -1.9 724,294 - RR42_RS03265 0.83 +0.7 724,294 - RR42_RS03265 0.83 +0.1 724,297 - RR42_RS03265 0.83 +0.5 724,442 + +0.7 724,442 + -0.6 724,442 + -0.1 724,755 + +0.0 724,755 + -2.3 724,756 - -0.1 724,756 - -0.2 724,756 - -0.6 724,764 + -0.9 724,764 + -1.4 724,765 - -1.4 724,765 - -1.0 724,765 - -0.4 724,765 - -0.4 724,874 - -0.3 724,879 - -0.4 724,888 + +0.7 724,888 + -0.7 725,166 + -0.1 725,166 + -0.1 725,167 - +0.3 725,167 - +0.2 725,167 - +0.3 725,167 - -0.5 725,187 + +0.7 725,281 + RR42_RS03275 0.23 +0.3 725,290 + RR42_RS03275 0.25 -0.7 725,290 + RR42_RS03275 0.25 -0.6 725,290 + RR42_RS03275 0.25 +0.4 725,290 + RR42_RS03275 0.25 +0.1 725,290 + RR42_RS03275 0.25 -0.1 725,290 + RR42_RS03275 0.25 -0.2 725,291 - RR42_RS03275 0.25 +0.6 725,291 - RR42_RS03275 0.25 -2.2 725,291 - RR42_RS03275 0.25 +0.8 725,479 + RR42_RS03275 0.65 -0.3 725,480 - RR42_RS03275 0.65 -0.6 725,612 + -1.2 725,613 - +0.7 725,667 + -0.2 725,667 + -0.0 725,667 + -0.2 725,667 + +3.5 725,668 - +0.8 725,700 - +0.1 726,067 - RR42_RS03280 0.34 +0.5
Or see this region's nucleotide sequence