Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00800

Experiment: R2A 23C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00785 and RR42_RS00790 are separated by 109 nucleotidesRR42_RS00790 and RR42_RS00795 are separated by 105 nucleotidesRR42_RS00795 and RR42_RS00800 are separated by 107 nucleotidesRR42_RS00800 and RR42_RS00805 are separated by 278 nucleotidesRR42_RS00805 and RR42_RS00810 are separated by 89 nucleotidesRR42_RS00810 and RR42_RS00815 are separated by 134 nucleotides RR42_RS00785: RR42_RS00785 - LuxR family transcriptional regulator, at 196,382 to 197,014 _RS00785 RR42_RS00790: RR42_RS00790 - chemotaxis protein CheY, at 197,124 to 197,531 _RS00790 RR42_RS00795: RR42_RS00795 - bacteriolytic lipoprotein entericidin AB, at 197,637 to 197,780 _RS00795 RR42_RS00800: RR42_RS00800 - histidine kinase, at 197,888 to 199,342 _RS00800 RR42_RS00805: RR42_RS00805 - membrane protein, at 199,621 to 199,794 _RS00805 RR42_RS00810: RR42_RS00810 - membrane protein, at 199,884 to 200,045 _RS00810 RR42_RS00815: RR42_RS00815 - hypothetical protein, at 200,180 to 200,596 _RS00815 Position (kb) 197 198 199 200Strain fitness (log2 ratio) -2 -1 0 1 2at 196.929 kb on - strand, within RR42_RS00785at 196.929 kb on - strand, within RR42_RS00785at 196.982 kb on + strandat 196.982 kb on + strandat 196.982 kb on + strandat 196.983 kb on - strandat 196.986 kb on - strandat 197.047 kb on - strandat 197.101 kb on + strandat 197.174 kb on - strand, within RR42_RS00790at 197.201 kb on + strand, within RR42_RS00790at 197.202 kb on - strand, within RR42_RS00790at 197.299 kb on - strand, within RR42_RS00790at 197.299 kb on - strand, within RR42_RS00790at 197.397 kb on + strand, within RR42_RS00790at 197.397 kb on + strand, within RR42_RS00790at 197.398 kb on - strand, within RR42_RS00790at 197.398 kb on - strand, within RR42_RS00790at 197.398 kb on - strand, within RR42_RS00790at 197.420 kb on + strand, within RR42_RS00790at 197.421 kb on - strand, within RR42_RS00790at 197.421 kb on - strand, within RR42_RS00790at 197.424 kb on + strand, within RR42_RS00790at 197.511 kb on + strandat 197.512 kb on - strandat 197.546 kb on + strandat 197.547 kb on - strandat 197.565 kb on - strandat 197.565 kb on - strandat 197.568 kb on + strandat 197.568 kb on + strandat 197.569 kb on - strandat 197.573 kb on + strandat 197.574 kb on - strandat 197.574 kb on - strandat 197.778 kb on + strandat 197.778 kb on + strandat 197.778 kb on + strandat 197.778 kb on + strandat 197.778 kb on + strandat 197.779 kb on - strandat 197.779 kb on - strandat 197.779 kb on - strandat 197.779 kb on - strandat 197.825 kb on - strandat 197.889 kb on + strandat 197.889 kb on + strandat 197.890 kb on - strandat 197.890 kb on - strandat 198.225 kb on + strand, within RR42_RS00800at 198.225 kb on + strand, within RR42_RS00800at 198.226 kb on - strand, within RR42_RS00800at 198.265 kb on - strand, within RR42_RS00800at 198.529 kb on + strand, within RR42_RS00800at 198.766 kb on + strand, within RR42_RS00800at 198.767 kb on - strand, within RR42_RS00800at 198.826 kb on - strand, within RR42_RS00800at 198.960 kb on + strand, within RR42_RS00800at 199.101 kb on + strand, within RR42_RS00800at 199.102 kb on - strand, within RR42_RS00800at 199.104 kb on + strand, within RR42_RS00800at 199.105 kb on - strand, within RR42_RS00800at 199.116 kb on + strand, within RR42_RS00800at 199.116 kb on + strand, within RR42_RS00800at 199.117 kb on - strand, within RR42_RS00800at 199.203 kb on - strandat 199.228 kb on + strandat 199.228 kb on + strandat 199.228 kb on + strandat 199.229 kb on - strandat 199.229 kb on - strandat 199.229 kb on - strandat 199.230 kb on + strandat 199.230 kb on + strandat 199.231 kb on - strandat 199.231 kb on - strandat 199.285 kb on + strandat 199.554 kb on + strandat 199.686 kb on + strand, within RR42_RS00805at 199.686 kb on + strand, within RR42_RS00805at 199.687 kb on - strand, within RR42_RS00805at 199.687 kb on - strand, within RR42_RS00805at 199.792 kb on + strandat 199.793 kb on - strandat 199.894 kb on - strandat 199.933 kb on + strand, within RR42_RS00810at 200.174 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A 23C
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196,929 - RR42_RS00785 0.86 +1.4
196,929 - RR42_RS00785 0.86 -0.2
196,982 + +0.1
196,982 + +0.0
196,982 + -0.3
196,983 - -1.0
196,986 - -0.1
197,047 - +0.4
197,101 + -0.0
197,174 - RR42_RS00790 0.12 -0.3
197,201 + RR42_RS00790 0.19 +0.0
197,202 - RR42_RS00790 0.19 -0.6
197,299 - RR42_RS00790 0.43 +0.5
197,299 - RR42_RS00790 0.43 +0.3
197,397 + RR42_RS00790 0.67 -0.2
197,397 + RR42_RS00790 0.67 +0.3
197,398 - RR42_RS00790 0.67 +0.1
197,398 - RR42_RS00790 0.67 -0.3
197,398 - RR42_RS00790 0.67 +0.2
197,420 + RR42_RS00790 0.73 +0.4
197,421 - RR42_RS00790 0.73 -1.8
197,421 - RR42_RS00790 0.73 -0.3
197,424 + RR42_RS00790 0.74 -1.1
197,511 + -0.2
197,512 - -0.2
197,546 + -0.5
197,547 - -0.1
197,565 - +1.0
197,565 - +0.6
197,568 + +0.0
197,568 + +0.9
197,569 - +0.2
197,573 + +0.8
197,574 - -0.0
197,574 - -0.6
197,778 + +0.3
197,778 + +0.2
197,778 + +0.2
197,778 + -0.4
197,778 + -1.6
197,779 - +0.1
197,779 - -0.5
197,779 - +0.6
197,779 - +0.2
197,825 - -0.3
197,889 + +0.3
197,889 + -1.0
197,890 - -1.1
197,890 - +0.7
198,225 + RR42_RS00800 0.23 -0.3
198,225 + RR42_RS00800 0.23 -0.4
198,226 - RR42_RS00800 0.23 -0.6
198,265 - RR42_RS00800 0.26 -1.2
198,529 + RR42_RS00800 0.44 -0.3
198,766 + RR42_RS00800 0.60 +0.4
198,767 - RR42_RS00800 0.60 -1.2
198,826 - RR42_RS00800 0.64 -0.6
198,960 + RR42_RS00800 0.74 -1.1
199,101 + RR42_RS00800 0.83 +0.1
199,102 - RR42_RS00800 0.83 -0.6
199,104 + RR42_RS00800 0.84 -0.7
199,105 - RR42_RS00800 0.84 -0.7
199,116 + RR42_RS00800 0.84 -2.5
199,116 + RR42_RS00800 0.84 -0.2
199,117 - RR42_RS00800 0.84 -1.0
199,203 - -0.6
199,228 + +0.3
199,228 + -0.6
199,228 + -0.3
199,229 - +0.2
199,229 - -0.2
199,229 - -1.4
199,230 + +1.8
199,230 + -0.6
199,231 - +0.4
199,231 - -1.0
199,285 + -0.3
199,554 + +0.8
199,686 + RR42_RS00805 0.37 +0.5
199,686 + RR42_RS00805 0.37 +0.1
199,687 - RR42_RS00805 0.38 -0.0
199,687 - RR42_RS00805 0.38 -1.5
199,792 + -0.8
199,793 - -0.8
199,894 - -0.2
199,933 + RR42_RS00810 0.30 -0.6
200,174 - +0.4

Or see this region's nucleotide sequence