Experiment: R2A 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00750 and RR42_RS00755 are separated by 123 nucleotides RR42_RS00755 and RR42_RS00760 are separated by 251 nucleotides RR42_RS00760 and RR42_RS00765 are separated by 149 nucleotides
RR42_RS00750: RR42_RS00750 - hypothetical protein, at 188,442 to 189,422
_RS00750
RR42_RS00755: RR42_RS00755 - 3-oxoadipate enol-lactonase, at 189,546 to 190,388
_RS00755
RR42_RS00760: RR42_RS00760 - hypothetical protein, at 190,640 to 190,897
_RS00760
RR42_RS00765: RR42_RS00765 - sulfurtransferase, at 191,047 to 191,439
_RS00765
Position (kb) 189
190
191 Strain fitness (log2 ratio) -2
-1
0
1
2 at 188.883 kb on + strand, within RR42_RS00750 at 189.145 kb on - strand, within RR42_RS00750 at 189.145 kb on - strand, within RR42_RS00750 at 189.216 kb on + strand, within RR42_RS00750 at 189.216 kb on + strand, within RR42_RS00750 at 189.216 kb on + strand, within RR42_RS00750 at 189.216 kb on + strand, within RR42_RS00750 at 189.216 kb on + strand, within RR42_RS00750 at 189.216 kb on + strand, within RR42_RS00750 at 189.216 kb on + strand, within RR42_RS00750 at 189.216 kb on + strand, within RR42_RS00750 at 189.216 kb on + strand, within RR42_RS00750 at 189.217 kb on - strand, within RR42_RS00750 at 189.217 kb on - strand, within RR42_RS00750 at 189.217 kb on - strand, within RR42_RS00750 at 189.239 kb on + strand, within RR42_RS00750 at 189.450 kb on - strand at 189.727 kb on - strand, within RR42_RS00755 at 189.772 kb on - strand, within RR42_RS00755 at 189.772 kb on - strand, within RR42_RS00755 at 190.184 kb on + strand, within RR42_RS00755 at 190.184 kb on + strand, within RR42_RS00755 at 190.305 kb on - strand at 190.381 kb on + strand at 190.381 kb on + strand at 190.381 kb on + strand at 190.381 kb on + strand at 190.382 kb on - strand at 190.382 kb on - strand at 190.382 kb on - strand at 190.475 kb on + strand at 190.475 kb on + strand at 190.475 kb on + strand at 190.475 kb on + strand at 190.475 kb on + strand at 190.476 kb on - strand at 190.490 kb on + strand at 190.634 kb on + strand at 190.635 kb on - strand at 190.635 kb on - strand at 190.653 kb on - strand at 190.653 kb on - strand at 190.725 kb on - strand, within RR42_RS00760 at 190.864 kb on + strand, within RR42_RS00760 at 190.864 kb on + strand, within RR42_RS00760 at 190.865 kb on - strand, within RR42_RS00760 at 190.865 kb on - strand, within RR42_RS00760 at 190.895 kb on + strand at 190.896 kb on - strand at 190.896 kb on - strand at 190.964 kb on - strand at 190.998 kb on + strand at 190.998 kb on + strand at 191.051 kb on + strand at 191.051 kb on + strand at 191.052 kb on - strand at 191.052 kb on - strand at 191.052 kb on - strand at 191.094 kb on + strand, within RR42_RS00765 at 191.094 kb on + strand, within RR42_RS00765 at 191.094 kb on + strand, within RR42_RS00765 at 191.094 kb on + strand, within RR42_RS00765 at 191.095 kb on - strand, within RR42_RS00765 at 191.095 kb on - strand, within RR42_RS00765 at 191.147 kb on + strand, within RR42_RS00765 at 191.148 kb on - strand, within RR42_RS00765 at 191.351 kb on + strand, within RR42_RS00765 at 191.351 kb on + strand, within RR42_RS00765 at 191.352 kb on - strand, within RR42_RS00765 at 191.352 kb on - strand, within RR42_RS00765 at 191.352 kb on - strand, within RR42_RS00765 at 191.374 kb on + strand, within RR42_RS00765
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 23C remove 188,883 + RR42_RS00750 0.45 -0.3 189,145 - RR42_RS00750 0.72 -1.5 189,145 - RR42_RS00750 0.72 -1.3 189,216 + RR42_RS00750 0.79 -0.0 189,216 + RR42_RS00750 0.79 -0.8 189,216 + RR42_RS00750 0.79 -1.6 189,216 + RR42_RS00750 0.79 -1.7 189,216 + RR42_RS00750 0.79 +1.2 189,216 + RR42_RS00750 0.79 -0.0 189,216 + RR42_RS00750 0.79 +0.0 189,216 + RR42_RS00750 0.79 -0.2 189,216 + RR42_RS00750 0.79 +0.6 189,217 - RR42_RS00750 0.79 -1.0 189,217 - RR42_RS00750 0.79 +0.1 189,217 - RR42_RS00750 0.79 -1.0 189,239 + RR42_RS00750 0.81 -0.4 189,450 - -0.3 189,727 - RR42_RS00755 0.21 -0.8 189,772 - RR42_RS00755 0.27 -0.2 189,772 - RR42_RS00755 0.27 -0.0 190,184 + RR42_RS00755 0.76 -1.2 190,184 + RR42_RS00755 0.76 +1.9 190,305 - -0.2 190,381 + +0.9 190,381 + +0.4 190,381 + -0.4 190,381 + -1.1 190,382 - -0.6 190,382 - +2.4 190,382 - -1.8 190,475 + -0.8 190,475 + -0.5 190,475 + -0.5 190,475 + +0.4 190,475 + -0.4 190,476 - +0.1 190,490 + +0.0 190,634 + -1.6 190,635 - -0.0 190,635 - -1.2 190,653 - +0.2 190,653 - -0.2 190,725 - RR42_RS00760 0.33 +0.3 190,864 + RR42_RS00760 0.87 -1.2 190,864 + RR42_RS00760 0.87 -0.3 190,865 - RR42_RS00760 0.87 -2.3 190,865 - RR42_RS00760 0.87 -0.4 190,895 + -0.8 190,896 - -0.2 190,896 - +0.2 190,964 - -0.6 190,998 + -0.1 190,998 + -0.2 191,051 + -0.6 191,051 + -0.0 191,052 - -0.3 191,052 - -0.3 191,052 - -2.1 191,094 + RR42_RS00765 0.12 -0.6 191,094 + RR42_RS00765 0.12 +0.1 191,094 + RR42_RS00765 0.12 -0.2 191,094 + RR42_RS00765 0.12 -0.4 191,095 - RR42_RS00765 0.12 -0.0 191,095 - RR42_RS00765 0.12 -0.6 191,147 + RR42_RS00765 0.25 +0.0 191,148 - RR42_RS00765 0.26 -1.1 191,351 + RR42_RS00765 0.77 +0.2 191,351 + RR42_RS00765 0.77 -0.5 191,352 - RR42_RS00765 0.78 +0.5 191,352 - RR42_RS00765 0.78 -0.7 191,352 - RR42_RS00765 0.78 +0.4 191,374 + RR42_RS00765 0.83 -0.2
Or see this region's nucleotide sequence