Experiment: R2A 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00550 and RR42_RS00555 are separated by 108 nucleotides RR42_RS00555 and RR42_RS00560 are separated by 82 nucleotides
RR42_RS00550: RR42_RS00550 - hypothetical protein, at 146,632 to 147,564
_RS00550
RR42_RS00555: RR42_RS00555 - cobyric acid synthase, at 147,673 to 148,440
_RS00555
RR42_RS00560: RR42_RS00560 - ADP-ribosylglycohydrolase, at 148,523 to 149,665
_RS00560
Position (kb) 147
148
149 Strain fitness (log2 ratio) -2
-1
0
1
2 at 146.719 kb on + strand at 146.719 kb on + strand at 146.719 kb on + strand at 146.720 kb on - strand at 146.720 kb on - strand at 147.062 kb on + strand, within RR42_RS00550 at 147.063 kb on - strand, within RR42_RS00550 at 147.063 kb on - strand, within RR42_RS00550 at 147.107 kb on - strand, within RR42_RS00550 at 147.107 kb on - strand, within RR42_RS00550 at 147.107 kb on - strand, within RR42_RS00550 at 147.214 kb on + strand, within RR42_RS00550 at 147.214 kb on + strand, within RR42_RS00550 at 147.214 kb on + strand, within RR42_RS00550 at 147.215 kb on - strand, within RR42_RS00550 at 147.215 kb on - strand, within RR42_RS00550 at 147.215 kb on - strand, within RR42_RS00550 at 147.259 kb on + strand, within RR42_RS00550 at 147.259 kb on + strand, within RR42_RS00550 at 147.260 kb on - strand, within RR42_RS00550 at 147.260 kb on - strand, within RR42_RS00550 at 147.260 kb on - strand, within RR42_RS00550 at 147.260 kb on - strand, within RR42_RS00550 at 147.272 kb on - strand, within RR42_RS00550 at 147.668 kb on + strand at 147.668 kb on + strand at 147.669 kb on - strand at 147.704 kb on + strand at 147.720 kb on + strand at 147.721 kb on - strand at 147.721 kb on - strand at 147.721 kb on - strand at 147.721 kb on - strand at 147.931 kb on + strand, within RR42_RS00555 at 147.931 kb on + strand, within RR42_RS00555 at 147.931 kb on + strand, within RR42_RS00555 at 147.931 kb on + strand, within RR42_RS00555 at 147.932 kb on - strand, within RR42_RS00555 at 147.950 kb on + strand, within RR42_RS00555 at 147.950 kb on + strand, within RR42_RS00555 at 147.951 kb on - strand, within RR42_RS00555 at 148.028 kb on + strand, within RR42_RS00555 at 148.028 kb on + strand, within RR42_RS00555 at 148.059 kb on - strand, within RR42_RS00555 at 148.059 kb on - strand, within RR42_RS00555 at 148.070 kb on + strand, within RR42_RS00555 at 148.071 kb on - strand, within RR42_RS00555 at 148.071 kb on - strand, within RR42_RS00555 at 148.071 kb on - strand, within RR42_RS00555 at 148.109 kb on + strand, within RR42_RS00555 at 148.110 kb on - strand, within RR42_RS00555 at 148.235 kb on + strand, within RR42_RS00555 at 148.236 kb on - strand, within RR42_RS00555 at 148.236 kb on - strand, within RR42_RS00555 at 148.422 kb on + strand at 148.426 kb on + strand at 148.426 kb on + strand at 148.426 kb on + strand at 148.457 kb on - strand at 148.479 kb on + strand at 148.479 kb on + strand at 148.479 kb on + strand at 148.480 kb on - strand at 148.485 kb on - strand at 148.485 kb on - strand at 148.524 kb on + strand at 148.524 kb on + strand at 148.525 kb on - strand at 148.533 kb on - strand at 148.533 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 23C remove 146,719 + -2.1 146,719 + -2.0 146,719 + -0.6 146,720 - -1.6 146,720 - -0.8 147,062 + RR42_RS00550 0.46 +0.9 147,063 - RR42_RS00550 0.46 -0.6 147,063 - RR42_RS00550 0.46 -0.0 147,107 - RR42_RS00550 0.51 -1.6 147,107 - RR42_RS00550 0.51 -2.4 147,107 - RR42_RS00550 0.51 -1.0 147,214 + RR42_RS00550 0.62 -1.7 147,214 + RR42_RS00550 0.62 -1.1 147,214 + RR42_RS00550 0.62 +0.2 147,215 - RR42_RS00550 0.62 -0.1 147,215 - RR42_RS00550 0.62 -0.6 147,215 - RR42_RS00550 0.62 -0.3 147,259 + RR42_RS00550 0.67 -0.6 147,259 + RR42_RS00550 0.67 -1.2 147,260 - RR42_RS00550 0.67 -0.0 147,260 - RR42_RS00550 0.67 -2.0 147,260 - RR42_RS00550 0.67 +0.4 147,260 - RR42_RS00550 0.67 +0.1 147,272 - RR42_RS00550 0.69 -0.8 147,668 + +0.4 147,668 + -1.2 147,669 - -0.7 147,704 + -0.2 147,720 + +0.6 147,721 - +1.0 147,721 - +0.0 147,721 - +0.1 147,721 - -0.4 147,931 + RR42_RS00555 0.34 -1.6 147,931 + RR42_RS00555 0.34 -2.0 147,931 + RR42_RS00555 0.34 -0.7 147,931 + RR42_RS00555 0.34 -0.6 147,932 - RR42_RS00555 0.34 +2.7 147,950 + RR42_RS00555 0.36 -0.3 147,950 + RR42_RS00555 0.36 -0.3 147,951 - RR42_RS00555 0.36 -1.2 148,028 + RR42_RS00555 0.46 -0.5 148,028 + RR42_RS00555 0.46 -1.4 148,059 - RR42_RS00555 0.50 -1.1 148,059 - RR42_RS00555 0.50 -0.8 148,070 + RR42_RS00555 0.52 +0.1 148,071 - RR42_RS00555 0.52 -1.2 148,071 - RR42_RS00555 0.52 -0.1 148,071 - RR42_RS00555 0.52 -0.8 148,109 + RR42_RS00555 0.57 -1.2 148,110 - RR42_RS00555 0.57 -1.0 148,235 + RR42_RS00555 0.73 -0.0 148,236 - RR42_RS00555 0.73 +0.2 148,236 - RR42_RS00555 0.73 -0.5 148,422 + -0.3 148,426 + +0.0 148,426 + -1.2 148,426 + +2.0 148,457 - -0.6 148,479 + -2.3 148,479 + -0.5 148,479 + -1.2 148,480 - +0.0 148,485 - -0.2 148,485 - -1.0 148,524 + +0.5 148,524 + -2.0 148,525 - -1.1 148,533 - +0.5 148,533 - -1.6
Or see this region's nucleotide sequence