Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4876

Experiment: epiphytic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Lima bean
5,786,744	+		Psyr_4875	0.12	+0.9
5,786,751	+		Psyr_4875	0.13	+1.2
5,786,751	+		Psyr_4875	0.13	-0.8
5,786,752	-		Psyr_4875	0.13	-0.4
5,786,752	-		Psyr_4875	0.13	+0.4
5,786,902	+		Psyr_4875	0.32	-0.4
5,786,902	+		Psyr_4875	0.32	+0.1
5,786,902	+		Psyr_4875	0.32	+0.1
5,786,902	+		Psyr_4875	0.32	+0.9
5,786,902	+		Psyr_4875	0.32	+0.4
5,786,902	+		Psyr_4875	0.32	-0.4
5,786,902	+		Psyr_4875	0.32	-0.1
5,786,903	-		Psyr_4875	0.32	+0.4
5,786,903	-		Psyr_4875	0.32	-0.2
5,786,903	-		Psyr_4875	0.32	+0.1
5,786,903	-		Psyr_4875	0.32	-2.6
5,786,903	-		Psyr_4875	0.32	-0.8
5,786,903	-		Psyr_4875	0.32	+0.3
5,786,903	-		Psyr_4875	0.32	-0.2
5,786,961	+		Psyr_4875	0.39	+0.1
5,786,961	+		Psyr_4875	0.39	+1.9
5,786,962	-		Psyr_4875	0.39	-0.4
5,786,962	-		Psyr_4875	0.39	-0.4
5,786,979	-		Psyr_4875	0.41	-0.8
5,786,979	-		Psyr_4875	0.41	+0.4
5,787,012	+		Psyr_4875	0.46	+0.4
5,787,012	+		Psyr_4875	0.46	+0.5
5,787,012	+		Psyr_4875	0.46	-1.5
5,787,012	+		Psyr_4875	0.46	+0.2
5,787,013	-		Psyr_4875	0.46	+0.3
5,787,013	-		Psyr_4875	0.46	-0.3
5,787,024	+		Psyr_4875	0.47	+0.0
5,787,024	+		Psyr_4875	0.47	+0.8
5,787,060	-		Psyr_4875	0.52	+0.7
5,787,060	-		Psyr_4875	0.52	-0.6
5,787,293	+		Psyr_4875	0.81	-0.1
5,787,293	+		Psyr_4875	0.81	-0.6
5,787,294	-		Psyr_4875	0.81	-0.9
5,787,294	-		Psyr_4875	0.81	+0.6
5,787,556	+				-2.6
5,787,557	-				+0.3
5,787,557	-				-0.1
5,787,778	+		Psyr_4876	0.31	-1.5
5,787,779	-		Psyr_4876	0.32	-0.5
5,787,779	-		Psyr_4876	0.32	-0.2
5,787,796	+		Psyr_4876	0.33	-0.2
5,787,797	-		Psyr_4876	0.33	+0.0
5,787,797	-		Psyr_4876	0.33	-1.0
5,787,875	-		Psyr_4876	0.42	-0.4
5,787,959	+		Psyr_4876	0.50	-0.9
5,787,967	+		Psyr_4876	0.51	-0.9
5,787,967	+		Psyr_4876	0.51	-0.4
5,787,967	+		Psyr_4876	0.51	-0.6
5,787,967	+		Psyr_4876	0.51	-0.9
5,787,968	-		Psyr_4876	0.51	-1.9
5,787,968	-		Psyr_4876	0.51	-0.1
5,787,968	-		Psyr_4876	0.51	-2.1
5,788,007	-		Psyr_4876	0.55	-0.7
5,788,025	+		Psyr_4876	0.57	-0.4
5,788,124	-		Psyr_4876	0.67	-0.3
5,788,132	+		Psyr_4876	0.68	-1.1
5,788,132	+		Psyr_4876	0.68	-0.1
5,788,132	+		Psyr_4876	0.68	+1.4
5,788,132	+		Psyr_4876	0.68	-0.8
5,788,132	+		Psyr_4876	0.68	+0.6
5,788,132	+		Psyr_4876	0.68	+1.2
5,788,132	+		Psyr_4876	0.68	+0.2
5,788,132	+		Psyr_4876	0.68	+0.1
5,788,132	+		Psyr_4876	0.68	-0.4
5,788,132	+		Psyr_4876	0.68	-1.4
5,788,132	+		Psyr_4876	0.68	-2.3
5,788,132	+		Psyr_4876	0.68	+0.9
5,788,132	+		Psyr_4876	0.68	-0.7
5,788,132	+		Psyr_4876	0.68	+0.2
5,788,132	+		Psyr_4876	0.68	-1.1
5,788,132	+		Psyr_4876	0.68	+1.3
5,788,133	-		Psyr_4876	0.68	-0.4
5,788,133	-		Psyr_4876	0.68	-0.2
5,788,133	-		Psyr_4876	0.68	+0.2
5,788,133	-		Psyr_4876	0.68	-0.2
5,788,133	-		Psyr_4876	0.68	-0.2
5,788,133	-		Psyr_4876	0.68	-0.4
5,788,133	-		Psyr_4876	0.68	-0.6
5,788,133	-		Psyr_4876	0.68	+0.3
5,788,133	-		Psyr_4876	0.68	-0.4
5,788,133	-		Psyr_4876	0.68	+0.1
5,788,133	-		Psyr_4876	0.68	-1.3
5,788,133	-		Psyr_4876	0.68	+0.6
5,788,206	+		Psyr_4876	0.76	+1.0
5,788,206	+		Psyr_4876	0.76	+0.3
5,788,206	+		Psyr_4876	0.76	-0.6
5,788,206	+		Psyr_4876	0.76	-1.0
5,788,207	-		Psyr_4876	0.76	+0.1
5,788,207	-		Psyr_4876	0.76	-0.5
5,788,207	-		Psyr_4876	0.76	-1.5
5,788,327	+		Psyr_4876	0.88	+0.1
5,788,327	+		Psyr_4876	0.88	-1.1
5,788,328	-		Psyr_4876	0.88	+0.7
5,788,328	-		Psyr_4876	0.88	+0.3
5,788,328	-		Psyr_4876	0.88	-0.3
5,788,328	-		Psyr_4876	0.88	+0.1
5,788,328	-		Psyr_4876	0.88	-0.8
5,788,328	-		Psyr_4876	0.88	-0.1
5,788,328	-		Psyr_4876	0.88	+0.7
5,788,439	+				-0.1
5,788,439	+				-0.6
5,788,452	-				+0.6
5,788,455	+				-0.9
5,788,455	+				+0.7
5,788,455	+				-0.7
5,788,455	+				-0.0
5,788,455	+				-0.4
5,788,455	+				+0.4
5,788,455	+				-0.5
5,788,455	+				-1.3
5,788,456	-				+0.1
5,788,456	-				-0.3
5,788,456	-				-1.4
5,788,456	-				+0.3
5,788,456	-				+0.3
5,788,518	-				-0.1
5,788,518	-				-1.6
5,788,599	+				-0.3
5,788,599	+				-0.9
5,788,599	+				-0.4
5,788,599	+				-0.6
5,788,599	+				-0.8
5,788,599	+				-0.8
5,788,599	+				-0.3
5,788,599	+				-0.4
5,788,599	+				-0.6
5,788,599	+				+1.6
5,788,599	+				+0.6
5,788,600	-				+0.4
5,788,600	-				-0.7
5,788,600	-				+0.0
5,788,600	-				+1.9
5,788,600	-				-0.1
5,788,600	-				+0.1
5,788,600	-				+1.3
5,788,672	+				-0.1
5,788,672	+				+0.4
5,788,673	-				+0.6
5,788,676	+				+0.1
5,788,676	+				-1.3
5,788,677	-				+0.2
5,788,677	-				+0.4
5,788,701	-				-0.1
5,788,744	+				-0.3
5,788,744	+				+0.1
5,788,768	+				-0.3
5,788,769	-				-0.2
5,788,812	-				+0.9
5,788,871	+				-0.6
5,788,871	+				-0.0
5,788,871	+				-1.5
5,788,871	+				+0.9
5,788,872	-				-0.6
5,788,872	-				+0.6
5,788,872	-				+0.1
5,788,930	+		Psyr_4877	0.17	+0.2
5,788,930	+		Psyr_4877	0.17	+0.1
5,788,930	+		Psyr_4877	0.17	+0.1
5,788,930	+		Psyr_4877	0.17	-0.2
5,788,930	+		Psyr_4877	0.17	-1.0
5,788,931	-		Psyr_4877	0.17	-0.4
5,788,973	+		Psyr_4877	0.24	-0.1
5,788,973	+		Psyr_4877	0.24	+0.4
5,788,973	+		Psyr_4877	0.24	+1.0
5,788,973	+		Psyr_4877	0.24	+1.0
5,788,973	+		Psyr_4877	0.24	-0.6
5,788,973	+		Psyr_4877	0.24	-0.5
5,788,973	+		Psyr_4877	0.24	-0.7
5,788,973	+		Psyr_4877	0.24	-1.7
5,788,973	+		Psyr_4877	0.24	-0.2
5,788,974	-		Psyr_4877	0.24	+0.4
5,788,974	-		Psyr_4877	0.24	+0.3
5,788,974	-		Psyr_4877	0.24	-0.9
5,788,974	-		Psyr_4877	0.24	+1.4
5,788,974	-		Psyr_4877	0.24	-0.3
5,788,974	-		Psyr_4877	0.24	-1.3
5,788,974	-		Psyr_4877	0.24	-1.3
5,788,974	-		Psyr_4877	0.24	+0.3
5,789,025	+		Psyr_4877	0.32	+0.1
5,789,046	-		Psyr_4877	0.35	-0.6
5,789,049	+		Psyr_4877	0.36	-0.1
5,789,049	+		Psyr_4877	0.36	+0.1
5,789,050	-		Psyr_4877	0.36	+0.8
5,789,050	-		Psyr_4877	0.36	-0.4
5,789,138	+		Psyr_4877	0.49	-0.1
5,789,139	-		Psyr_4877	0.50	+0.0
5,789,139	-		Psyr_4877	0.50	+0.3
5,789,398	+				-0.0
5,789,398	+				-0.6
5,789,398	+				+0.5
5,789,398	+				+0.5
5,789,398	+				+0.7
5,789,398	+				-0.3
5,789,399	-				+0.4